MmuEX6101554 @ mm9
Exon Skipping
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60619918-60635799:-
Coord C1 exon
chr2:60635741-60635799
Coord A exon
chr2:60630746-60630837
Coord C2 exon
chr2:60619918-60620075
Length
92 bp
Sequences
Splice sites
3' ss Seq
GAGTGTCTTTTGCATTTCAGGTT
3' ss Score
9.13
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATGGGAAGATCGTGTCCACAAAGGCGATTTTGGATAAGGCCACCAACAAGTGCAAAG
Seq A exon
GTTATGGTTTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAATGGAGTCCAGGCTCAGATGGCAAAG
Seq C2 exon
CAACAGGAACAAGATCCTACCAACCTGTACATTTCTAACCTGCCGCTGTCCATGGATGAGCAGGAACTTGAAAATATGCTCAAACCCTTTGGACAAGTTATTTCTACAAGGGTCCTACGTGATTCCAGTGGTGCCAGCCGTGGTGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.301 C2=0.340
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(30.3=100)
A:
PF0007617=RRM_1=PD(37.9=80.6)
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTCCACAAAGGCGATTT
R:
GCACCACTGGAATCACGTAGG
Band lengths:
182-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: