BtaEX6009554 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005180 | RBMS1
Description
Bos taurus RNA binding motif, single stranded interacting protein 1 (RBMS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035361]
Coordinates
chr2:36137115-36151576:+
Coord C1 exon
chr2:36137115-36137173
Coord A exon
chr2:36142090-36142181
Coord C2 exon
chr2:36151419-36151576
Length
92 bp
Sequences
Splice sites
3' ss Seq
AATTGTGTTTTGCATTTCAGGTT
3' ss Score
10.47
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATGGGAAGATTGTTTCCACAAAGGCAATTTTGGATAAGACAACAAACAAATGCAAAG
Seq A exon
GTTATGGTTTTGTTGACTTTGACAGTCCTGCAGCAGCTCAGAAGGCTGTGTCTGCCCTGAAGGCAAGTGGGGTTCAAGCTCAAATGGCAAAG
Seq C2 exon
CAACAGGAACAAGATCCTACCAACTTGTATATTTCTAATTTGCCACTGTCCATGGATGAGCAAGAACTTGAAAATATGCTGAAACCATTTGGACAAGTGATTTCTACAAGGATACTACGCGATTCCAGTGGGACAAGTCGTGGTGTTGGCTTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005180-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.290 C2=0.396
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
PF0007617=RRM_1=PD(38.8=83.9)
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCACAAAGGCAATTTTGGA
R:
TCCCACTGGAATCGCGTAGTA
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]