RnoEX0074739 @ rn6
Exon Skipping
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46831857-46847426:-
Coord C1 exon
chr3:46847368-46847426
Coord A exon
chr3:46842330-46842421
Coord C2 exon
chr3:46831857-46832014
Length
92 bp
Sequences
Splice sites
3' ss Seq
GAGTGTCTTTTGCATTTCAGGTT
3' ss Score
9.13
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATACGGGAAGATTGTCTCCACGAAGGCGATTTTGGATAAGGCAACCAACAAGTGCAAAG
Seq A exon
GTTATGGATTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAGTGGAGTCCAGGCTCAGATGGCAAAG
Seq C2 exon
CAACAGGAACAAGATCCTACCAACCTGTACATTTCTAACCTGCCACTGTCCATGGATGAACAAGAACTTGAAAATATGCTCAAACCCTTTGGACAAGTTATTTCTACAAGGGTCCTGCGTGATTCCAGTGGTACCAGCCGTGGTGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482-'12-9,'12-8,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.290 C2=0.453
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
PF0007617=RRM_1=PD(38.8=83.9)
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACGAAGGCGATTTTGGA
R:
GTACCACTGGAATCACGCAGG
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]