DreEX6090819 @ danRer10
Exon Skipping
Gene
ENSDARG00000074023 | rbms1a
Description
RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
Coordinates
chr11:10950780-10956296:+
Coord C1 exon
chr11:10950780-10950838
Coord A exon
chr11:10952990-10953081
Coord C2 exon
chr11:10956139-10956296
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTTTTTTTTTCATAGGAT
3' ss Score
10.92
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATGGGAAGATCGTGTCCACCAAAGCCATTCTTGACAAGACTACAAACAAATGCAAAG
Seq A exon
GATATGGGTTTGTGGATTTCGACAGTCCCGTGTCCGCACAAAAGGCCGTCGCAGCACTGAAGACCAACGGAGTTCAGGCTCAGATGGCCAAG
Seq C2 exon
CAACAGGAGCAGGACCCGACTAACCTGTACCTCTCCAACCTGCCCGTGTCCATGGATGAGCAGGAGCTTGAAAACCTCCTCAAACCCTTTGGACAGGTCGTGTCCACCCGAATTCTGCGCGACACTAATGGAATGAGCCGGGGGGTGGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074023-'8-4,'8-3,9-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.290 C2=0.245
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
PF0007617=RRM_1=PD(38.8=83.9)
C2:
PF0007617=RRM_1=PU(64.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGTGTCCACCAAAGCCAT
R:
TTAGTGTCGCGCAGAATTCGG
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]