RnoEX0077305 @ rn6
Exon Skipping
Gene
ENSRNOG00000057159 | Rsl1
Description
regulator of sex limited protein 1 [Source:RGD Symbol;Acc:1587849]
Coordinates
chr2:87018305-87027864:+
Coord C1 exon
chr2:87018305-87018529
Coord A exon
chr2:87026095-87026241
Coord C2 exon
chr2:87027738-87027864
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATATTCCTGATACCCTGTAGGTG
3' ss Score
7.46
5' ss Seq
TAGGTACAG
5' ss Score
4.67
Exon sequences
Seq C1 exon
TGGAAGGCGGAAGAAGCCGCCAGTTTTTGTTCTGCTGAACTGGCTGGGTCACGTGAGGTTGCAGTTCTGGACTGGGAACAGGGCGGTTGGGTTGTTCCCTGGGGTATGGTTTCTTTAGGACACCGCGAGCAGTCGGAGTACGCCTTGGACTTTTAGAACACCAGAGGAGTTTGGTAGCGCGGGAGTAGATAATCTGGCACGGGGAAGGATTGCAAGCTAATGATG
Seq A exon
GTGGGAATCTCCTAGGACCTCATTCCTATAGACCTCATTCTTCGCTGGAATGTACTTAAAAGCTGCTGAGAGATGGGGAATGTCTACGCTAAGGATGAAGCCACTCACTGTTCATCTGGTGCAAAGGGGTCAGCCCTCAAAACCTAG
Seq C2 exon
GATATGCTCTCATTCTGGGATGTGGCCATTGATTTCTCTCCAGAAGAGTGGGAGTGGCTGAAGCCTGCTCAGTGGAGTCTGTACAGGGATGTGATGCTGGAAAATTACAGCAACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057159_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSRNOT00000079449fB12731
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAGCCGCCAGTTTTTG
R:
GCCACATCCCAGAATGAGAGC
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]