RnoEX0077303 @ rn6
Exon Skipping
Gene
ENSRNOG00000057159 | Rsl1
Description
regulator of sex limited protein 1 [Source:RGD Symbol;Acc:1587849]
Coordinates
chr2:87018098-87028576:+
Coord C1 exon
chr2:87018098-87018198
Coord A exon
chr2:87027738-87027864
Coord C2 exon
chr2:87028481-87028576
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTACTGGTCTTTATTTCAGGAT
3' ss Score
10.16
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
AAGCGATCCCAATTTAAGTTTCGTTTTTTTACAAGTGTGTCTTCCTCAAAGTTTTGCGAGGGTCCTGTGTGGCTGTTCATTGTGTAGTCTCTGTCATGAAG
Seq A exon
GATATGCTCTCATTCTGGGATGTGGCCATTGATTTCTCTCCAGAAGAGTGGGAGTGGCTGAAGCCTGCTCAGTGGAGTCTGTACAGGGATGTGATGCTGGAAAATTACAGCAACCTTGTGTTCCTGG
Seq C2 exon
GTCTTGCTGTCTCTAAACCACAGCTGGTGACATTTCTGGAGCAAAGACCAGAGCCTATGGATGTGAAAAGACAAGAGGCAGCTACTGTACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057159-'1-3,'1-2,6-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGATCCCAATTTAAGTTTCGT
R:
TGAATGTACAGTAGCTGCCTCT
Band lengths:
195-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]