HsaEX6008344 @ hg19
Exon Skipping
Gene
ENSG00000234444 | ZNF736
Description
zinc finger protein 736 [Source:HGNC Symbol;Acc:32467]
Coordinates
chr7:63774251-63797740:+
Coord C1 exon
chr7:63774251-63774531
Coord A exon
chr7:63796637-63796763
Coord C2 exon
chr7:63797265-63797740
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATATGTTTTGTTTTCCAGGGA
3' ss Score
9.39
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GATTGAAACGGGTGGGGCCTGGAGCCCTAGCCAATCAGTGGCGCCAGCGTGAAACTGTCCAATCAAGTGCGCAGCTACAGAGGAAGAGGCGGCCTCTTCAATATGGCGGGGCCTTTGTCTCCTAGCTTCCGGGCTCTGATCCTAGTTCGCGTCTCCACTGTTCCATCTCCTCCGTTCCTGGAGTTCCTCGGTGACTCTACTATAGCTTCTGTTATCCTGTGACCTGCAGGTACTGGGAGATCCATAGGGAGGACGGCGGAACATCTGGAGGCTGGGAAATG
Seq A exon
GGAGTGTTGACATTCAGGGATGTGGCTGTAGAATTCTCCCCAGAAGAGTGGGAATGCCTGGACTCTGCTCAGCAGCGTTTGTATAGGGATGTGATGTTAGAGAACTATGGAAACCTGGTCTCCTTGG
Seq C2 exon
GTCTTGCTATCTTTAAGCCAGACTTGATGACCTGTCTGGAGCAAAGAAAAGAGCCTTGGAAAGTGAAGAGACAGGAGGCAGTAGCCAAACACCCAGGTAGGTGGGAGTGAATGAAGCAGATGACACAAATGACGGATCCCAATGTCAAGGAGGAAGCCAAACCTTTAAACATGCTTCCAGAAGCTCTGCTCCAGTGGAAATGGTTTCTGAGAAACCTTCATTTCTTTCTCTTGCTTTAACATAGGGACATTTTTTGTCCCATTCTTGTGAATTTTCCAAGCACTGTACTTCCCCTTCAGTAATGTGTGTGTGTGTGTTGTGTGTGTGTTTTGTTTTGTTTTTTGTTTTTAGTTTACAGCAATAATGAAAGTCTTTCATGGCTTGACAGAAAATGTGTGATTTGACTGCTTTTCCATTGCTTTGGGGAAACAGCAATATCTGTATTTTTGAGAAACTATATTAAACCATTTTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234444-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGGGCTCTGATCCTAGT
R:
ACCTACCTGGGTGTTTGGCTA
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)