RnoEX0079401 @ rn6
Exon Skipping
Gene
ENSRNOG00000021101 | Sema6c
Description
semaphorin 6C [Source:RGD Symbol;Acc:3659]
Coordinates
chr2:196330755-196334779:+
Coord C1 exon
chr2:196330755-196331048
Coord A exon
chr2:196333710-196333799
Coord C2 exon
chr2:196334611-196334779
Length
90 bp
Sequences
Splice sites
3' ss Seq
TATTTATATTTCAATTTCAGAGG
3' ss Score
7.88
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
Exon sequences
Seq C1 exon
CCGGAGGCGGGCCGGGCTGGGAGGCGGGCGGGGCGGCTGGGGCCGAGCCCAGAGCCCCGGGCGGTCGCATTGTTTTCCTCCGCCGATCTGCGGCGGGAATAGGGGCTTCTACTCAGACCCAAGACTCTCGTAACCCGACAGCGCCTTGGAGCCTAAATCTAAGCACGATTCAGACAGGACGCTCGTCGCGTCTTGCCAGAGCCCCAACCACGGATTGCGAACTCTGCCCGAGCTAGGGGCCGCCTGCTGCTCCCTGGACCTTGCTGACCCGGATCTCGGAGCAAGTACCTTGGG
Seq A exon
AGGCAGCCTGATGAGGGAAGAAGGGGAAAGCGGGGCACGTTCAGCCATTTCTTCTCACCCGTCCTTTCTATCCTTCGTTCAGCATAGGGG
Seq C2 exon
GGCCAGCATATGGGTGAGGGGGTACTCCCTGGGGCTTGAGCTGCCCCGCACAGGATGCCCCGTGCCCCCCACTCCATGCCCTTGCTGCTGCTGTTGCTGCTGTCACTCCCCCAAGCCCAGACTGCCTTTCCCCAGGACCCCATCCCTCTGTTGACCTCTGACCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021101_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGGAGCAAGTACCTTGGG
R:
AGAGGTCAACAGAGGGATGGG
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]