RnoEX0079399 @ rn6
Exon Skipping
Gene
ENSRNOG00000021101 | Sema6c
Description
semaphorin 6C [Source:RGD Symbol;Acc:3659]
Coordinates
chr2:196330755-196334779:+
Coord C1 exon
chr2:196330755-196331048
Coord A exon
chr2:196332934-196332981
Coord C2 exon
chr2:196334611-196334779
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCCTTCCTCCCTTAGATC
3' ss Score
12.76
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCGGAGGCGGGCCGGGCTGGGAGGCGGGCGGGGCGGCTGGGGCCGAGCCCAGAGCCCCGGGCGGTCGCATTGTTTTCCTCCGCCGATCTGCGGCGGGAATAGGGGCTTCTACTCAGACCCAAGACTCTCGTAACCCGACAGCGCCTTGGAGCCTAAATCTAAGCACGATTCAGACAGGACGCTCGTCGCGTCTTGCCAGAGCCCCAACCACGGATTGCGAACTCTGCCCGAGCTAGGGGCCGCCTGCTGCTCCCTGGACCTTGCTGACCCGGATCTCGGAGCAAGTACCTTGGG
Seq A exon
ATCAGAGGGCCCTATCCCTCTTCATCCCCACAGGACCCACCACCCCAG
Seq C2 exon
GGCCAGCATATGGGTGAGGGGGTACTCCCTGGGGCTTGAGCTGCCCCGCACAGGATGCCCCGTGCCCCCCACTCCATGCCCTTGCTGCTGCTGTTGCTGCTGTCACTCCCCCAAGCCCAGACTGCCTTTCCCCAGGACCCCATCCCTCTGTTGACCTCTGACCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021101_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCTCGGAGCAAGTACCT
R:
GAGTGACAGCAGCAACAGCAG
Band lengths:
133-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]