RnoEX0079921 @ rn6
Exon Skipping
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39738542-39744826:-
Coord C1 exon
chr15:39744726-39744826
Coord A exon
chr15:39742088-39742421
Coord C2 exon
chr15:39738542-39738667
Length
334 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTGTTGTCACTGCAGAGT
3' ss Score
6.84
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GGCGCTCTCTTTCGTGGCTGCTGGTTCCGAGTAATTTGGCTATAATGGGCTGTTGGCAGCGGAGCACAGTTTAAATCTCAGGACACTGGTCCGTTGCACAG
Seq A exon
AGTGGTTCATGTATTTATGGACCAGACCATGGGATGAACTTTTATTTTTAAAAAGACATTGTCAGTAGTCCTGATCCAGTTTTCAAGCGGCGTTGACGAGTATGCTGTACCTGTTTTTCGTCATTCTGAAAGTTTATTCAAGCACAGTTTCTACTTGAAAATTCAAATACTAGAGAATATTAGGAAGTGGCCTAATGACATACTCTATTGAAGGACTACAGATTCCACAGAGACTGCATTTGAATCTCAGTTACTCTCCAATTAAAGTGGTTTTGATTAACCTAATTTTGAAGAATTTTGTATAAGCAACACCAAAAGATGGAAGAAAAAATTG
Seq C2 exon
GTGATGCAAAGACTTTCTGGATGGAGCTACAAGATGATGGTAAAGTTGACTTTATGTTTGAGAAAGCACAAGATGTCCTACATTCACTGAAACAGAAGATAAAAGATGGGTCTGCCACAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.024 C2=0.140
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTTTCGTGGCTGCTGG
R:
CTCCATTTGTGGCAGACCCA
Band lengths:
223-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]