Special

MmuEX0041868 @ mm9

Exon Skipping

Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:60049980-60059714:-
Coord C1 exon
chr14:60059424-60059714
Coord A exon
chr14:60056274-60056602
Coord C2 exon
chr14:60049980-60050105
Length
329 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTGTTTTCGCTGCAGAGT
3' ss Score
9.19
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GCGGGGCCGCGGAAACTGTGTGGAGCTCCCTTGGGGCTGATGTCTCCCCCGCTGAGGTGAAGCCGCCTCGGGACTGCAGACTCTGGTGCGGACAGTGCAAGGCGCGCGGGGTGCCAGGCCGCCTCAACCCGCTGTCTCAGTAGCGGGGGTGGCCGGGGCTCTCAGTCGCGTTTCCCCCACCGTCTTGCGGCGCTCACTTTCGTGGCTGGTGATTTCTGAGTAATTTGGCTATCATGGGCTGTAGACAGCGGAGCACAGACAAGATCTTCAGGACACTGGTCCATTCCACAG
Seq A exon
AGTGTTTCATGCATTTGTGGACCAAAACATGGGATGAACTTTAATTTTAAAAAGACATTGTCAGTAGTCCTGATCCGGCTTTCAACCTGGCCTTGAAGAAGATGCTGTGCCTGTTTTTCTTGGACTAGTAGTCATTCTGAAAGTCTATTCAAGCACAGTTTCTATTTGCAAATTCAAATACTAAAGACTATTAGGAAGTGGCCTAACGAGATACTCTCTTTGGGGACTACAGATTTCATAGAGACTGCAGTTGGAGCCCATTTAGTTTTGATTAACTTCATTTTGAAGAATTTTATATAAGCAACACCAAAAGATGGAAGAAAAAAATG
Seq C2 exon
GTGATGCAAAGACTTTCTGGATGGAGCTACAAGATGATGGTAAAGTTGACTTAATGTTTGAGAAAACACAAAATGTCCTACATTCACTGAAACAGAAGATAAAGGATGGGTCTGCCACAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=0.750 C2=0.366
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NO

							
C2:
PF127032=plasmid_Toxin=PU(73.6=90.7)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000093450





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000106884, ENSMUSP00000124696, ENSMUSP00000130483
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr13:49451553-49451909 
ALTERNATIVE
HsaEX0057523
(SETDB2)
Human
(hg19)
chr13:50025689-50026045 
ALTERNATIVE
HsaEX0057523
(SETDB2)
Rat
(rn6)
chr15:39742088-39742421 
RnoEX0079921
(Setdb2)
Cow
(bosTau6)
chr12:19111056-19111409 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTCGGGACTGCAGACTCTGG

				
R: 
CTCCATTTGTGGCAGACCCA

				
Band lengths: 
351-680

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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