MmuEX0041868 @ mm10
Exon Skipping
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:59431143-59440884:-
Coord C1 exon
chr14:59440587-59440884
Coord A exon
chr14:59437437-59437765
Coord C2 exon
chr14:59431143-59431268
Length
329 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTGTTTTCGCTGCAGAGT
3' ss Score
9.19
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
CGGCGCCGCGGGGCCGCGGAAACTGTGTGGAGCTCCCTTGGGGCTGATGTCTCCCCCGCTGAGGTGAAGCCGCCTCGGGACTGCAGACTCTGGTGCGGACAGTGCAAGGCGCGCGGGGTGCCAGGCCGCCTCAACCCGCTGTCTCAGTAGCGGGGGTGGCCGGGGCTCTCAGTCGCGTTTCCCCCACCGTCTTGCGGCGCTCACTTTCGTGGCTGGTGATTTCTGAGTAATTTGGCTATCATGGGCTGTAGACAGCGGAGCACAGACAAGATCTTCAGGACACTGGTCCATTCCACAG
Seq A exon
AGTGTTTCATGCATTTGTGGACCAAAACATGGGATGAACTTTAATTTTAAAAAGACATTGTCAGTAGTCCTGATCCGGCTTTCAACCTGGCCTTGAAGAAGATGCTGTGCCTGTTTTTCTTGGACTAGTAGTCATTCTGAAAGTCTATTCAAGCACAGTTTCTATTTGCAAATTCAAATACTAAAGACTATTAGGAAGTGGCCTAACGAGATACTCTCTTTGGGGACTACAGATTTCATAGAGACTGCAGTTGGAGCCCATTTAGTTTTGATTAACTTCATTTTGAAGAATTTTATATAAGCAACACCAAAAGATGGAAGAAAAAAATG
Seq C2 exon
GTGATGCAAAGACTTTCTGGATGGAGCTACAAGATGATGGTAAAGTTGACTTAATGTTTGAGAAAACACAAAATGTCCTACATTCACTGAAACAGAAGATAAAGGATGGGTCTGCCACAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.690 C2=0.355
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGACTGCAGACTCTGG
R:
CTCCATTTGTGGCAGACCCA
Band lengths:
351-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types