RnoEX0088581 @ rn6
Exon Skipping
Gene
ENSRNOG00000008859 | Tank
Description
TRAF family member-associated NFKB activator [Source:RGD Symbol;Acc:628859]
Coordinates
chr3:47490257-47505294:+
Coord C1 exon
chr3:47490257-47490375
Coord A exon
chr3:47491796-47491882
Coord C2 exon
chr3:47505224-47505294
Length
87 bp
Sequences
Splice sites
3' ss Seq
AACTTCCTCTGCTTGGCTAGCTT
3' ss Score
3.45
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATAACACTTGTGACTATGTACCTTTGCTTGAAGACAGTGACAGAAGGAAGAATAATTTGACCCTTGATGAACCACATGATAAAGTGAAACTAGGAACACTGAGAGATAAGCAATCAAAG
Seq A exon
CTTATGTCCAAAGAATTAACAATGCTGCACCAATTGCACTGTGTTTGTGGACAGACCATGGACAAGGGCTAAAGAAATAAGCTCTGG
Seq C2 exon
GTGAGAAGACAAGAAGTTTCTTCTGGAAAAGAGACCTCAAAGGATCTGAGCATCCCTTTGCATCATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008859_MULTIEX1-4/7=3-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=0.000 C2=0.875
Domain overlap (PFAM):
C1:
PF067856=UPF0242=PD(17.9=37.5),PF048597=DUF641=PD(22.5=50.0),PF041569=IncA=PD(34.0=80.0)
A:
PF041569=IncA=PD(9.8=45.8)
C2:
PF067856=UPF0242=FE(16.4=100),PF128452=TBD=PU(8.8=20.8)
Main Inclusion Isoform:
ENSRNOT00000011794fB14757
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTGCTTGAAGACAGTGACA
R:
TCATGATGCAAAGGGATGCTCA
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]