RnoEX0088580 @ rn6
Exon Skipping
Gene
ENSRNOG00000008859 | Tank
Description
TRAF family member-associated NFKB activator [Source:RGD Symbol;Acc:628859]
Coordinates
chr3:47488351-47505294:+
Coord C1 exon
chr3:47488351-47488459
Coord A exon
chr3:47490257-47490375
Coord C2 exon
chr3:47505224-47505294
Length
119 bp
Sequences
Splice sites
3' ss Seq
GCAAGTGTTTTGTCTTGCAGATA
3' ss Score
8.71
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACTGAGAACTATGAACAAAGAATACGCGAGCAACAGGAACAGCTGTCATTTCAACAAACTCTCATTGACAGGCTAAAGTCACAGCTACGTCTTGTGGATTCTAGTCGAG
Seq A exon
ATAACACTTGTGACTATGTACCTTTGCTTGAAGACAGTGACAGAAGGAAGAATAATTTGACCCTTGATGAACCACATGATAAAGTGAAACTAGGAACACTGAGAGATAAGCAATCAAAG
Seq C2 exon
GTGAGAAGACAAGAAGTTTCTTCTGGAAAAGAGACCTCAAAGGATCTGAGCATCCCTTTGCATCATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008859_MULTIEX1-3/7=2-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.630 C2=0.875
Domain overlap (PFAM):
C1:
PF040127=PspA_IM30=PD(50.7=91.9),PF067856=UPF0242=FE(42.9=100),PF048597=DUF641=FE(40.4=100),PF041569=IncA=FE(38.3=100)
A:
PF067856=UPF0242=PD(17.9=37.5),PF048597=DUF641=PD(22.5=50.0),PF041569=IncA=PD(34.0=80.0)
C2:
PF067856=UPF0242=FE(16.4=100),PF128452=TBD=PU(8.8=20.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACTATGAACAAAGAATACGCG
R:
CTTTCATGATGCAAAGGGATGCT
Band lengths:
178-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]