MmuEX6101564 @ mm9
Exon Skipping
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61464963-61481842:+
Coord C1 exon
chr2:61464963-61465071
Coord A exon
chr2:61465778-61465896
Coord C2 exon
chr2:61481772-61481842
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACAAGTGTTTTGTCTTGCAGATA
3' ss Score
10.09
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACTGAGAACTATGAACAAAGAATACGCGAGCAACAGGAACAGCTGTCATTTCAACAAAACCTAATTGACAGGCTGAAATCACAGCTACTTCTCGTGGATTCTAGTCGAG
Seq A exon
ATAACAGTTATGGCTATGTACCTTTGCTTGAAGACAGTGACAGAAGGAAGAATAATTTGACCCTTGATGAACCACATGATAAAGTGAAACTAGGAACACTGAGAGATAAGCAATCAAAG
Seq C2 exon
GTGAGACGACAAGAAGTTTCTTCTGGAAAAGAATCCGCCAAGGGTCTCAACATCCCTCTGCATCACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289-'10-15,'10-12,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.642 C2=0.875
Domain overlap (PFAM):
C1:
PF067856=UPF0242=FE(43.4=100)
A:
PF067856=UPF0242=PD(15.4=35.0)
C2:
PF128452=TBD=PU(10.9=20.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACTATGAACAAAGAATACGCG
R:
CTTTCGTGATGCAGAGGGATGT
Band lengths:
178-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: