GgaEX1057156 @ galGal4
Exon Skipping
Gene
ENSGALG00000011131 | TANK
Description
TRAF family member-associated NF-kappa-B activator [Source:RefSeq peptide;Acc:NP_001264800]
Coordinates
chr7:20964206-20973052:-
Coord C1 exon
chr7:20972944-20973052
Coord A exon
chr7:20972005-20972117
Coord C2 exon
chr7:20964206-20964385
Length
113 bp
Sequences
Splice sites
3' ss Seq
CAGCTGCTTTTTGTTTTAAGGTA
3' ss Score
8.46
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ACAGAGAACTACATGCAGCAAATATGTGAACAGCAGGAACAGATAGAGCTTCAAAACAGCATTATTGCAAAACTGAATTCACAGTTAGCTGCTCTGAATGCTAATAGAG
Seq A exon
GTAATATGCATCCCTACATTCTGAGGCATGAAGATATTGAAACCTCCAACTTATCTTTTAGCCAGCTCTCTGAAAAACTGAATGTAGCAAAGCGAAGAGAAAGACTCCTAAAG
Seq C2 exon
GAACAGTTAGAAAATGAGAGCATGAAGTTGAAGCAACTTGAGGACAGAAACAGTGAAAAGGAAAGGAGGCTTATGTCTATTGTTTCCAACCAAGAAGATAAAATACGAACTCTGAAAAACAAATTGAAAGAATTAAGTGACGCCCAAAAGGGTACACAGATGCCAACATACAAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.279 C2=0.780
Domain overlap (PFAM):
C1:
PF150351=Rootletin=FE(23.7=100),PF0246513=FliD_N=FE(43.4=100)
A:
PF150351=Rootletin=FE(24.3=100),PF0246513=FliD_N=PD(36.1=78.9)
C2:
PF150351=Rootletin=PD(34.9=88.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGGAACAGATAGAGCT
R:
TGGCATCTGTGTACCCTTTTGG
Band lengths:
245-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]