GgaEX1057156 @ galGal3
Exon Skipping
Gene
ENSGALG00000011131 | TANK
Description
NA
Coordinates
chr7:23050687-23060849:-
Coord C1 exon
chr7:23060741-23060849
Coord A exon
chr7:23059802-23059914
Coord C2 exon
chr7:23050687-23050763
Length
113 bp
Sequences
Splice sites
3' ss Seq
CAGCTGCTTTTTGTTTTAAGGTA
3' ss Score
8.46
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ACAGAGAACTACATGCAGCAAATATGTGAACAGCAGGAACAGATAGAGCTTCAAAACAGCATTATTGCAAAACTGAATTCACAGTTAGCTGCTCTGAATGCTAATAGAG
Seq A exon
GTAATATGCATCCCTACATTCTGAGGCATGAAGATATTGAAACCTCCAACTTATCTTTTAGCCAGCTCTCTGAAAAACTGAATGTAGCAAAGCGAAGAGAAAGACTCCTAAAG
Seq C2 exon
GTGAAAAGTAAGAAAGTTGTTCCAGATAAGCCTGAATTATCTATAGGGATTTCTGGTATTTCACCTTTGCCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131-'2-7,'2-3,3-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.151 C2=0.260
Domain overlap (PFAM):
C1:
PF083176=Spc7=FE(31.6=100),PF0192313=Cob_adeno_trans=FE(31.6=100),PF0246513=FliD_N=FE(36.7=100),PF103924=COG5=FE(33.6=100)
A:
PF083176=Spc7=FE(32.5=100),PF0192313=Cob_adeno_trans=FE(32.5=100),PF0246513=FliD_N=FE(37.8=100),PF103924=COG5=FE(34.6=100)
C2:
PF083176=Spc7=PD(6.1=26.9),PF0192313=Cob_adeno_trans=PD(9.6=42.3),PF0246513=FliD_N=PD(7.1=26.9),PF103924=COG5=PD(2.8=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAACTACATGCAGCAA
R:
AGAAATCCCTATAGATAATTCAGGCT
Band lengths:
163-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]