MmuEX6101564 @ mm10
Exon Skipping
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61626906-61643785:+
Coord C1 exon
chr2:61626906-61627014
Coord A exon
chr2:61627721-61627839
Coord C2 exon
chr2:61643715-61643785
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACAAGTGTTTTGTCTTGCAGATA
3' ss Score
10.09
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACTGAGAACTATGAACAAAGAATACGCGAGCAACAGGAACAGCTGTCATTTCAACAAAACCTAATTGACAGGCTGAAATCACAGCTACTTCTCGTGGATTCTAGTCGAG
Seq A exon
ATAACAGTTATGGCTATGTACCTTTGCTTGAAGACAGTGACAGAAGGAAGAATAATTTGACCCTTGATGAACCACATGATAAAGTGAAACTAGGAACACTGAGAGATAAGCAATCAAAG
Seq C2 exon
GTGAGACGACAAGAAGTTTCTTCTGGAAAAGAATCCGCCAAGGGTCTCAACATCCCTCTGCATCACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289_MULTIEX1-4/9=3-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.637 C2=0.875
Domain overlap (PFAM):
C1:
PF067856=UPF0242=FE(40.0=100)
A:
PF067856=UPF0242=PD(17.6=37.5)
C2:
PF128452=TBD=PU(8.8=20.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACTATGAACAAAGAATACGCG
R:
CTTTCGTGATGCAGAGGGATGT
Band lengths:
178-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types