BtaEX0035596 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006654 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:35258420-35300122:-
Coord C1 exon
chr2:35299975-35300122
Coord A exon
chr2:35276763-35276881
Coord C2 exon
chr2:35258420-35258496
Length
119 bp
Sequences
Splice sites
3' ss Seq
AAGAGGTTTTTGTCTTACAGATA
3' ss Score
7.33
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATCTGTCATTTACTTCATCATTTATAGTGATGCAACAGGACATAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCTTATGAAGCCTTTCGACAGGCATGCATGGATAGAGATTCTGCAGTAAAGGAACTACAGCAGAAG
Seq A exon
ATAACAGTTGTGGCTATGTTCCCCTGCTTGAAGACAGTGAAGCAAGGAAGAATAATTTGACTCTTGATCAGCCTCATGATAAAGCAAAATCAGGAATACCGAGAGAAAAAGAATCAAAG
Seq C2 exon
GTAAGAAGACAAGAGGTTTCCTCTCCAAGGAAAGAAACTTCACCAAGGAATCTTGGCACTCCTTTATTCCATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006654_MULTIEX1-5/9=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.725 C2=0.846
Domain overlap (PFAM):
C1:
PF125063=DUF3713=PU(34.7=78.8)
A:
PF125063=DUF3713=PD(14.7=27.5)
C2:
PF128452=TBD=PU(8.8=19.2)
Main Skipping Isoform:
ENSBTAT00000046172fB6924
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATTTATAGTGATGCAACAGGA
R:
TTTCATGGAATAAAGGAGTGCCA
Band lengths:
210-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development