HsaEX0063577 @ hg19

Exon Skipping

Gene

ENSG00000136560 | TANK

Description

TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:11562]

Coordinates

chr2:162036125-162080502:+

Coord C1 exon

chr2:162036125-162036272

Coord A exon

chr2:162061186-162061304

Coord C2 exon

chr2:162080426-162080502

Length

119 bp

Sequences

Splice sites

3' ss Seq

AAGAGGTTTTTGTCTTGCAGATA

3' ss Score

7.86

5' ss Seq

AAGGTAGAC

5' ss Score

7.07

Exon sequences

Seq C1 exon

ACCTGTCATTTACTCCATCCTTTATAGTGATGCTACAGGACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAAAGCGTATGAAGCCTTCCGGCAGGCATGCATGGATAGAGATTCTGCAGTAAAAGAATTACAGCAAAAG

Seq A exon

ATAACAATTATGGCTGTGTTCCTCTGCTTGAAGACAGTGAAACAAGAAAGAATAATTTGACTCTTGATCAGCCACAAGATAAAGTGATTTCAGGAATAGCAAGAGAAAAACTACCAAAG

Seq C2 exon

GTAAGAAGACAAGAGGTTTCTTCTCCTAGAAAAGAAACTTCAGCAAGGAGTCTTGGCAGTCCTTTGCTCCATGAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136560_MULTIEX2-4/5=C1-5

Average complexity

C3

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.286 A=0.509 C2=0.902

Domain overlap (PFAM):

C1:

PF0189514=PhoU=PU(41.0=97.0),PF075417=EIF_2_alpha=PU(43.2=97.0),PF0205011=FliJ=PU(41.7=90.9),PF131661=AAA_13=PU(45.1=97.0),PF051038=DivIVA=PU(39.4=78.8),PF040127=PspA_IM30=PU(46.3=93.9),PF089415=USP8_interact=PU(28.6=54.5),PF041569=IncA=PU(39.2=87.9),PF125063=DUF3713=PU(39.5=90.9)

A:

PF131661=AAA_13=PD(1.4=2.5),PF150661=CAGE1=PD(31.3=77.5),PF0149614=V_ATPase_I=FE(31.0=100),PF041569=IncA=PD(33.7=82.5),PF0246513=FliD_N=PD(33.8=67.5),PF125063=DUF3713=PD(30.9=75.0)

C2:

PF041569=IncA=PD(10.9=57.7),PF128452=TBD=PU(9.8=19.2)

Main Inclusion Isoform:

ENSP00000259075