RnoEX0088583 @ rn6
Exon Skipping
Gene
ENSRNOG00000008859 | Tank
Description
TRAF family member-associated NFKB activator [Source:RGD Symbol;Acc:628859]
Coordinates
chr3:47500783-47505294:+
Coord C1 exon
chr3:47500783-47500913
Coord A exon
chr3:47501938-47502017
Coord C2 exon
chr3:47505224-47505294
Length
80 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGCTTTCTCCTTAGTTC
3' ss Score
9.32
5' ss Seq
TCAGTTAGT
5' ss Score
-0.03
Exon sequences
Seq C1 exon
CACGTGCATATCTGGTGGCAGTCACCTTGCGTCCACACTCAGGAAGAAAGCAGTGGCAAAAGCTGGCTCTGTGCTCTTCCACTTTGTCTCCAGTCTCAGCTCAGTCCATGAGGTGGGAGAGCACATTTAAG
Seq A exon
TTCAGTTGAATCTAATACTTGATGTCACCATGAATTCTGCCTCACTATATCTGAAGCTCATATGGAAATATCCAGACTCA
Seq C2 exon
GTGAGAAGACAAGAAGTTTCTTCTGGAAAAGAGACCTCAAAGGATCTGAGCATCCCTTTGCATCATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008859_MULTIEX1-6/7=5-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF067856=UPF0242=FE(16.4=100),PF128452=TBD=PU(8.8=20.8)
Main Inclusion Isoform:
ENSRNOT00000011794fB14759
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCGTCCACACTCAGGAAG
R:
TGCAAAGGGATGCTCAGATCC
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]