RnoEX0089627 @ rn6
Exon Skipping
Gene
ENSRNOG00000031126 | Tecta
Description
tectorin alpha [Source:RGD Symbol;Acc:1309824]
Coordinates
chr8:46667607-46673887:-
Coord C1 exon
chr8:46673823-46673887
Coord A exon
chr8:46670548-46670681
Coord C2 exon
chr8:46667607-46667894
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACCACCGTCTCTCTTGACAGCTC
3' ss Score
11.67
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GATGAATTATTCATCATTACTTAGAATTTGGGTCTCTTTCATCTTCGCTCTTGTTCGGCACCAAG
Seq A exon
CTCAGCCCAGGGAGCTCATGTATCCATTTTGGCAGAATGACACCAGAACCCCTAAAGTAGACGACGGAAGCTCATCTGAGATTAAGTTGGCCATCCCTGTCTTCTTCTTTGGTGTTCCTTACCGCACTGTCTAT
Seq C2 exon
GTTAATAACAACGGTGTTGTTTCCTTCAACGTGCTAGTGAGCCAGTTTACGCCAGAGTCCTTTCCCCTGACGGATGGGAGGGCCTTCATTGCTCCGTTTTGGGCAGACGTGCACAACGGAATTCGGGGTGAGATCTATTACAGAGAAACCATGGACTCTGCCATCTTGAGAAGAGCCACCAAGGACATCAGGAAGTACTTCAAAGACATGACCACCTTCTCTGCCACTTGGGTTTTCATTGTGACCTGGGAGGAAGTCACGTTTTACGGAGGCAGCAGTACCACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031126-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTTCGCTCTTGTTCGGC
R:
GTGGCAGAGAAGGTGGTCATG
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]