BtaEX6058757 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32262285-32268612:+
Coord C1 exon
chr15:32262285-32262348
Coord A exon
chr15:32265537-32265670
Coord C2 exon
chr15:32268325-32268612
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACCACCCTCTCTCTTGACAGTTC
3' ss Score
12.02
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
ATGAATTATTCATCATTACTTAGAATTTGGGTCTCTTTCATCTTCGCACTTGTATGGCACCAAG
Seq A exon
TTCAGCCCAGGGAACTCATGTATCCATTTTGGCAGAATGACACCAAAACCCCTAAAGTGGACGATGGAAGCTCATCTGAGATTAAGCTAGCCATTCCCGTCTTCTTCTTCGGTGTTCCTTACCGTACTGTCTAT
Seq C2 exon
GTCAATAACAACGGAGTTGTTTCCTTCAACGTGCTCGTGAGCCAGTTCACACCTGAATCTTTTCCCCTGACGGACGGGAGGGCCTTCATTGCTCCCTTTTGGGCAGATGTGCACAATGGGATTCGAGGCGAGATCTATTACAGAGAGACCATGGACCCTGTCATCTTGAAAAGAGCCACCAAGGACATCAGGAAGTACTTCAAAGACATGGCAACCTTCTCTGCCTCTTGGGTTTTCATTGTGACCTGGGAGGAAGTCACATTTTACGGAGGGAGCAGCACCACGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGCACTTGTATGGCACC
R:
ACCCAAGAGGCAGAGAAGGTT
Band lengths:
257-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]