GgaEX6025627 @ galGal4
Exon Skipping
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3549177-3551664:-
Coord C1 exon
chr24:3551600-3551664
Coord A exon
chr24:3550419-3550552
Coord C2 exon
chr24:3549177-3549464
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGAACCCCCTCTCCTTGCAGCTC
3' ss Score
11.87
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GATGAACACACGATCGTTGCTCAGTGCCTGGGCAGCCCTGTTGGTGGTAACCGTGCGGCACCGAG
Seq A exon
CTCACGCCATGGCAAGTCTGTACCCATTTTGGCCAAACGACACAAAAACTCCCAAAGTGGATGATGGGAGCTCTCCTGAGATCAAGCTCTCTGTTCCGTTCATCTTCTTTGGAGCCCCATACAGGACGGTTTAT
Seq C2 exon
GTGAACAACAACGGTGTGATCTCCTTCAACTCGCTGGTCAGCCAGTTCACACCTGAAGCCTTCCCACTGGCCGATGGCCGGGCCTTCGTTGCGCCCTTCTGGGCCGACGTGCACAATGGCATCCGTGGGGAGATCTACTACCGCGAGAGCACCAACCCTGAGCTGCTGGGCAGAGCCTCCAAGGACATCCGCAAGTACTTCAAGGACATGGCGTCCTTCTCTGCCAGCTGGGTCTTCATCGTCACCTGGGAGGAGGTGACGTTCTACGGGGGGAGCAGCACGACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACGATCGTTGCTCAGTG
R:
GTACTTGCGGATGTCCTTGGA
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]