DreEX6014062 @ danRer10
Exon Skipping
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62536991-62539834:-
Coord C1 exon
chr5:62539762-62539834
Coord A exon
chr5:62539227-62539366
Coord C2 exon
chr5:62536991-62537278
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTTCCTCTCCGTAGCCT
3' ss Score
10.92
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTGTTTAGGATGGTCAGAACAGGCACTTTAGTCTCTCTGCTCCAGCTCTTCAGCACCCTCGTTCCCAGCGGAG
Seq A exon
CCTTTTCTCAGGATACCCTTTACCCCTTTGGACCAGCTCACAGGGATTTAGAAACCCCTAAGATGGACGATGGCAGTTCCCCAGAGATCCCACTTCTAATTCCATTTATATTCTTCAATGTGCCCTATAGGTCTCTATAT
Seq C2 exon
GTCAACAACAATGGCGTAATCTCCTTCAACATTCAGGTGAGTCAGTTCACTCCAGAGGCTTTCCCCCTCAGTGACAGCCGCTCCTTCATTGCTCCTTTATGGGCTGATGTGCATAATGGCATACGTGGAGATGTGTACTACCGTGAAAGCACAGACACAGAGATCCTGGAGAGGGCCACTCAGGACGTCAGAAAATACTTCAAGAATATGGTATCCTTCACTGCCACCTGGGTCTTCATTACCACCTGGAATCAAGTCACCTTTTACGGGGGCAGCCAGACTACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGGTCAGAACAGGCACT
R:
GCCCTCTCCAGGATCTCTGTG
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]