MmuEX6065175 @ mm10
Exon Skipping
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42391849-42398277:-
Coord C1 exon
chr9:42398213-42398277
Coord A exon
chr9:42394933-42395066
Coord C2 exon
chr9:42391849-42392136
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACCACCATCTCTCTTGACAGCTC
3' ss Score
10.18
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GATGAATTATTCATCATTACTTAGAATTTGGGTCTCTTTCATCTTCGCTCTTGTTCGGCACCAAG
Seq A exon
CTCAGCCCAGGGAGCTCATGTATCCATTTTGGCAGAATGACACGAGAACCCCTAAAGTAGATGACGGAAGCTCCTCTGAGATTAAGTTGGCCATCCCCGTCTTCTTCTTTGGTGTTCCTTACCGCACCGTCTAT
Seq C2 exon
GTCAATAACAATGGTGTTGTTTCCTTCAACGTGCTAGTGAGCCAGTTTACACCAGAGTCCTTTCCCCTGACGGACGGGAGGGCCTTCATTGCTCCATTCTGGGCAGATGTGCACAATGGAATTCGGGGTGAGATCTATTACAGAGAAACCATGGACCCCGCCATCCTGAGAAGAGCCACCAAGGACATCAGGAAGTACTTCAAAGACATGACCACCTTCTCTGCCACTTGGGTTTTCATTGTGACCTGGGAGGAAGTCACGTTTTACGGAGGCAGCAGTACCACGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTTCGCTCTTGTTCGGC
R:
GTGGCAGAGAAGGTGGTCATG
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types