RnoEX0090867 @ rn6
Exon Skipping
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93492513-93496245:+
Coord C1 exon
chr10:93492513-93492602
Coord A exon
chr10:93494958-93495127
Coord C2 exon
chr10:93496107-93496245
Length
170 bp
Sequences
Splice sites
3' ss Seq
GCTGGTTTATGTGTCTTCAGGTT
3' ss Score
7.93
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCATGCGTGTAGGGAATACCGGATTCACAAAGAACTGGATCACCCCAGAATAGTGAAGCTGTATGATTACTTTTCACTGGACACTGACTC
Seq A exon
GTTTTGTACAGTATTAGAATACTGTGAAGGAAATGATCTGGACTTCTACCTAAAGCAGCACAAATTAATGTCGGAGAAAGAAGCCCGATCCATTATTATGCAGATTGTGAATGCTTTAAAGTACTTAAATGAAATAAAACCTCCCATCATACACTATGACCTCAAACCAG
Seq C2 exon
GTAATATCCTTTTAGTAAATGGTACAGCGTGTGGAGAGATAAAAATTACAGATTTTGGTCTTTCCAAGATCATGGATGACGATAGCTACAATTCAGTGGACGGCATGGAGCTAACGTCACAAGGTGCTGGTACTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285-'33-35,'33-33,35-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.7=100)
A:
PF0006920=Pkinase=FE(20.4=100)
C2:
PF0006920=Pkinase=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCGTGTAGGGAATACCG
R:
TAAGTACCAGCACCTTGTGACG
Band lengths:
226-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]