BtaEX0036542 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47663925-47673116:+
Coord C1 exon
chr19:47663925-47664014
Coord A exon
chr19:47667788-47667957
Coord C2 exon
chr19:47673005-47673116
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTTGGTTTATTTGTCTTTAGGTT
3' ss Score
8.58
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCATGCATGTAGGGAATACCGGATTCACAAAGAACTGGATCATCCCAGAATAGTTAAGCTGTATGATTACTTTTCACTGGACACTGACTC
Seq A exon
GTTTTGTACAGTACTAGAATACTGTGAGGGAAATGATCTGGACTTCTACCTGAAACAGCACAAATTAATGTCGGAGAAAGAAGCCCGATCCATTATCATGCAGATTGTGAATGCTTTAAAGTACTTAAATGAAATAAAACCTCCTATCATACACTATGACCTCAAACCAG
Seq C2 exon
GTATTTACCGCCAGAGTGTTTTGTGGTTGGGAAAGAACCACCAAAGATCTCAAATAAAGTTGACGTCTGGTCAGTGGGTGTGATCTTCTACCAGTGTCTTTACGGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713_MULTIEX2-3/4=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.7=100)
A:
PF0006920=Pkinase=FE(20.4=100)
C2:
PF0006920=Pkinase=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCATGTAGGGAATACCGG
R:
CTTCCTTCCGTAAAGACACTGGT
Band lengths:
202-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development