MmuEX6090412 @ mm9
Exon Skipping
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105128467-105132551:+
Coord C1 exon
chr11:105128467-105128556
Coord A exon
chr11:105130940-105131109
Coord C2 exon
chr11:105132413-105132551
Length
170 bp
Sequences
Splice sites
3' ss Seq
ATGCTGGTTTATGCCTTCAGGTT
3' ss Score
7.52
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCATGCGTGTAGGGAATACCGGATTCACAAGGAGCTGGACCACCCCAGGATAGTGAAGCTGTATGATTACTTTTCACTGGACACTGACTC
Seq A exon
GTTTTGTACAGTATTAGAATACTGTGAAGGGAATGACCTGGACTTCTACCTAAAACAGCACAAATTAATGTCGGAGAAAGAAGCCCGATCCATTATTATGCAGATTGTGAATGCTTTAAAGTACTTAAATGAAATAAAACCTCCCATCATACACTATGACCTCAAACCAG
Seq C2 exon
GTAATATCCTTTTAGTAAATGGTACAGCATGTGGAGAGATAAAAATTACAGATTTTGGTCTTTCCAAGATCATGGATGATGATAGCTACAATTCAGTGGATGGCATGGAGCTGACGTCACAAGGAGCTGGTACTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694-'28-33,'28-32,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.7=100)
A:
PF0006920=Pkinase=FE(20.4=100)
C2:
PF0006920=Pkinase=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCGTGTAGGGAATACCG
R:
TAAGTACCAGCTCCTTGTGACG
Band lengths:
226-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: