GgaEX1058711 @ galGal3
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2299856-2302215:+
Coord C1 exon
chr27:2299856-2299945
Coord A exon
chr27:2300422-2300591
Coord C2 exon
chr27:2302077-2302215
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGCTACTGTTTTGCCTTCAGGTT
3' ss Score
11.05
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
ACATGCGTGTAGAGAGTACAGAATTCACAAAGAACTGGATCATCCTCGAATAGTTAAGCTATATGACTACTTTTCACTGGATACTGACTC
Seq A exon
GTTTTGTACAGTGTTAGAATACTGTGAGGGAAACGATCTGGACTTCTACCTGAAACAGCACAAGTTAATGTCGGAGAAGGAGGCACGATCCATTATCATGCAGATTGTGAATGCTTTAAAATACTTAAATGAAATCAAACCTCCCATCATACACTATGACCTTAAACCAG
Seq C2 exon
GTAACATTCTTCTAGTCAATGGTACTGCATGCGGAGAGATAAAAATCACAGATTTTGGGCTTTCCAAAATCATGGATGATGACAGCTACAACTCTGTTGATGGCATGGAGCTGACATCGCAGGGGGCTGGTACTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410-'22-28,'22-27,23-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.7=100)
A:
PF0006920=Pkinase=FE(20.4=100)
C2:
PF0006920=Pkinase=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCGTGTAGAGAGTACAGA
R:
AGTAAGTACCAGCCCCCTGC
Band lengths:
228-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]