RnoEX0093512 @ rn6
Exon Skipping
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15732312-15782741:-
Coord C1 exon
chr9:15782639-15782741
Coord A exon
chr9:15781147-15781201
Coord C2 exon
chr9:15732312-15732423
Length
55 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGATGTCCTAAGAGG
3' ss Score
4.95
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGCCTGCAAGGAATGTTCCCATCCGAATTCTCCTCTTAGCTGTGGGTGACTTCCATCTCGCTGACCTCCCTGGGCACTGTTGGAGAAAGGAAGGATTTTGAG
Seq A exon
AGGCCAGCATTGAATCCCCAGGAGCTGGAGTTTCAGGAAGTTGTGAGCTGCCCAA
Seq C2 exon
ACCCAGGTCTCTTCTTCCCACCTGGCCAGCAGCATGTGAGCAGCATGACTGACCAGCTGCAGGAGGAGCCCCCAGAGCCAGGACCCCGACACAGCCCGCTGCCAAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598_MULTIEX1-3/3=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTTAGCTGTGGGTGACT
R:
CCTGCAGCTGGTCAGTCATG
Band lengths:
135-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]