RnoEX0093510 @ rn6
Exon Skipping
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15732312-15878463:-
Coord C1 exon
chr9:15878005-15878463
Coord A exon
chr9:15789330-15789416
Coord C2 exon
chr9:15732312-15732423
Length
87 bp
Sequences
Splice sites
3' ss Seq
CGTTTGGGTTACTTCCACAGGCT
3' ss Score
7.57
5' ss Seq
TAGGTATCT
5' ss Score
4.28
Exon sequences
Seq C1 exon
TGCATGTATATAGAAGGGGGAGGGGGGAGCAGATTTCCTGCGGGGAGGTTGAATGCATATGGAGAGGAGATTTCCTGGAGGGAGGGTTGAGGCGTAGACCGGACCGAGTAAGTTTCTTGCTGGGGTGGTGGCTGAAGGTGGTGAGTTGGTGCTTTGGAAAACCCAGAGCTTCCCACCCGGGACTCGGGGGGAGGGGGCCGTGTTGTGGGAGGGAGGGGCGAGGGGCCAGGTTCCCTGCTTGGGGAGAGGGGCTTGCATCTGGGGAGTATGTTTCCTGGCGGAGCGATATTTGTTTACAGGCTGAGGGCAGTACTGTAAATGAGTAGCTGCGAGAAGGCGGCTGACATAAATTAATATTGAAATTATTCCATCAGCTCGGCTCGTCCCCCATCTCACCCCCCAAGTGGAGATTGGTCGTCTTGTCGGATTGCCCAGGCACTTGTTGCCGAAACAGCCAAG
Seq A exon
GCTCCGGGTCCAGAGGGTGGTGACAAAGGAAGACACAGGAGCAAGGCGACCCTGAAGGAGGCACCCGCGGTCTCAATCCTGAAATAG
Seq C2 exon
ACCCAGGTCTCTTCTTCCCACCTGGCCAGCAGCATGTGAGCAGCATGACTGACCAGCTGCAGGAGGAGCCCCCAGAGCCAGGACCCCGACACAGCCCGCTGCCAAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598_MULTIEX1-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGGCGGCTGACATAAA
R:
TCAGTCATGCTGCTCACATGC
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]