HsaEX0066999 @ hg38
Exon Skipping
Gene
ENSG00000124496 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr6:42300638-42451261:-
Coord C1 exon
chr6:42451177-42451261
Coord A exon
chr6:42362997-42363079
Coord C2 exon
chr6:42300638-42300749
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGGTCACTCCTGCAGGCC
3' ss Score
8.34
5' ss Seq
CAGGTCGCT
5' ss Score
0.47
Exon sequences
Seq C1 exon
CTCTGCTCGCCCCCCATCTCACCCCCCAAGCGGATACTGGTCTTCTCGTCGGATTGCCCATGCACTTGTTGCAGAAACAGCCAAG
Seq A exon
GCCCTGGCTGTGGAGAATGCTGAAGGAAGAAGACGCAGAAGCAGGACGACCCTGAAAGATTCAGCCTCTTCATCCTCAAACAG
Seq C2 exon
GACCAGGCCTCCTCTTCCCACCTGTCCAGCAGCATGAAAGCAGCATGATTGGCCGACCGCAGGAGAAGCCCCCAGAACCAGGCCCCCAACTCAGCCATCTGCGGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124496_MULTIEX1-3/6=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGCGGATACTGGTCTTC
R:
CTCCGCAGATGGCTGAGTTG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development