HsaEX0066999 @ hg19
Exon Skipping
Gene
ENSG00000124496 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:18273]
Coordinates
chr6:42268376-42418999:-
Coord C1 exon
chr6:42418915-42418999
Coord A exon
chr6:42330735-42330817
Coord C2 exon
chr6:42268376-42268487
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGGTCACTCCTGCAGGCC
3' ss Score
8.34
5' ss Seq
CAGGTCGCT
5' ss Score
0.47
Exon sequences
Seq C1 exon
CTCTGCTCGCCCCCCATCTCACCCCCCAAGCGGATACTGGTCTTCTCGTCGGATTGCCCATGCACTTGTTGCAGAAACAGCCAAG
Seq A exon
GCCCTGGCTGTGGAGAATGCTGAAGGAAGAAGACGCAGAAGCAGGACGACCCTGAAAGATTCAGCCTCTTCATCCTCAAACAG
Seq C2 exon
GACCAGGCCTCCTCTTCCCACCTGTCCAGCAGCATGAAAGCAGCATGATTGGCCGACCGCAGGAGAAGCCCCCAGAACCAGGCCCCCAACTCAGCCATCTGCGGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124496_MULTIEX1-1/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGCGGATACTGGTCTTC
R:
CTCCGCAGATGGCTGAGTTG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)