MmuEX0048820 @ mm9
Exon Skipping
Gene
ENSMUSG00000064043 | Trerf1
Description
transcriptional regulating factor 1 [Source:MGI Symbol;Acc:MGI:2442086]
Coordinates
chr17:47278773-47423805:+
Coord C1 exon
chr17:47278773-47278858
Coord A exon
chr17:47367179-47367265
Coord C2 exon
chr17:47423691-47423805
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGTTTGGGTTGCTTCTACAGGCT
3' ss Score
7.69
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTCGGCTCGCCCCCCATCTCACCCCCCCAAGTGGAGATTGGTCGTCTTGTCGGATTGCCCAGGCACTTGTTGCCGAAACAGCCAAG
Seq A exon
GCTCCAGCTCCAGAGGTCAGTGAAGGAGGAAGACACGGGAGCAAGACTACCCTGAAGGGCTCACCAGCGGTCTCAACCCTGAAACAG
Seq C2 exon
ACCCGGGTCTCTTCTTCCCACCTGCCGAGCAGCATGTGAGCAGCATGACTGGCCAGCTGCAGGAGAAGCCCCCAGAGCCAGGACCGCGACACAGCCACCCGCTGCCAAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064043-'6-4,'6-3,13-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATTGGTCGTCTTGTCGG
R:
CTTGACCTTGGCAGCGGG
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: