RnoEX0094509 @ rn6
Exon Skipping
Gene
ENSRNOG00000061782 | Tspyl2
Description
TSPY-like 2 [Source:RGD Symbol;Acc:1563283]
Coordinates
chrX:22410938-22411500:-
Coord C1 exon
chrX:22411389-22411500
Coord A exon
chrX:22411165-22411263
Coord C2 exon
chrX:22410938-22411032
Length
99 bp
Sequences
Splice sites
3' ss Seq
TACGTTGGCATCGGGGACAGGAA
3' ss Score
2.48
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GTACAGGATCTCAGACATATCTCCATGGGCTACAAAATGAAGCTGTACTTCCAGACAAACCCATACTTCACAAACATGGTGATCGTCAAGGAGTTCCAGCGCAACCGCTCAG
Seq A exon
GAACCCCAGGTCTACAATCGCAGGAGCCACGACACCAGAGAAAGCTTCTTCAACTGGTTTTCCAACCACAGCCTCCCAGAAGCTGACAGAATTGCTGAG
Seq C2 exon
ATTATCAAGAATGACCTGTGGGTTAACCCAGTACGCTACTACATGAGAGGAGGTGGCTACAGAACAAGCAGAAAGAAGCAACTAGGAAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061782-'2-6,'2-5,3-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.184 C2=0.281
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(19.9=100)
A:
PF0095613=NAP=FE(25.8=100)
C2:
PF0095613=NAP=PD(8.6=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGACATATCTCCATGGGCT
R:
GCTTGTTCTGTAGCCACCTCC
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]