HsaEX0067692 @ hg19
Exon Skipping
Gene
ENSG00000184205 | TSPYL2
Description
TSPY-like 2 [Source:HGNC Symbol;Acc:24358]
Coordinates
chrX:53113714-53115595:+
Coord C1 exon
chrX:53113714-53114048
Coord A exon
chrX:53114136-53114281
Coord C2 exon
chrX:53114409-53115595
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATAGCCTTCTCTCTCCCTAGGCC
3' ss Score
11.93
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
CTCCACTCATCAGTTCCTCAACCACCCCAGAATTTCAATTTTGATCAACCGACGTGATGAAGACATTTTCCGCTACTTGACCAATCTGCAGGTCAGGCCAGAGAGACATTTTTTAGTAGGATCGGGCACGAATCTGGTTCTTGGAGGTGACGGGAGGTGGGTGGGAAGGGCCGTGGTGTGTTGGGGGGGGGACAGATTCCACCATCACCCCCACCTGGAGCAGGTACAGGATCTCAGACATATCTCCATGGGCTACAAAATGAAGCTGTACTTCCAGACTAACCCCTACTTCACAAACATGGTGATTGTCAAGGAGTTCCAGCGCAACCGCTCAG
Seq A exon
GCCGGCTGGTGTCTCACTCAACCCCAATCCGCTGGCACCGGGGCCAGGAACCCCAGGCCCGTCGTCACGGGAACCAGGATGCGAGCCACAGCTTTTTCAGCTGGTTCTCAAACCATAGCCTCCCAGAGGCTGACAGGATTGCTGAG
Seq C2 exon
ATTATCAAGAATGATCTGTGGGTTAACCCTCTACGCTACTACCTGAGAGAAAGGGGCTCCAGGATAAAGAGAAAGAAGCAAGAAATGAAGAAACGGTAATGGGAGTTTGGTCGCTGAGAGGTGGTTTGTTGGGGATGGGGAAAAGACTAGTGTAACACAGGATTTATGGAGCCAAAAAGGGACCTTTGAGATAATCCCAGTGGAATATGTTTTACAAGTGGGAAATCATGCCCAGAAATGGCTTGAGGTTACACAGTCAGGGGCAGAAGTGGGACTTTACCCACCCTAGCCCCATTCCTGGGATCCCTTATAGCCTACTGCTTCCCCAGTTACTTCCCACCTTTGAGTGCTATGAGTACACCACCTCCCACCAACCCTATACTCAGCCACAGCCTTCCTTACAGTAAAACCAGGGGCAGATGTGAGGTGGTGATCATGGAAGACGCCCCTGACTATTATGCAGTGGAAGACATTTTCAGCGAGATCTCAGACATTGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184205-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.214 A=0.245 C2=0.250
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(13.6=45.0)
A:
PF0095613=NAP=FE(25.7=100)
C2:
PF0095613=NAP=PD(9.1=53.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCAGGTACAGGATCTCA
R:
CACCTCTCAGCGACCAAACTC
Band lengths:
243-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)