BtaEX0038021 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017783 | TSPYL2
Description
TSPYL2; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKJ1]
Coordinates
chrX:95959733-95960290:+
Coord C1 exon
chrX:95959733-95959844
Coord A exon
chrX:95959925-95960070
Coord C2 exon
chrX:95960193-95960290
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATAGCCTCCTTTTTCCCCAGGCC
3' ss Score
9.51
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GTACAGGATCTCAGACATATCTCCATGGGCTACAAAATGAAGCTATACTTCCAGACAAACCCCTACTTCACAAATATGGTGATTGTCAAGGAGTTCCAGCGCAACCGCTCAG
Seq A exon
GCCGACTGGTGTCTCACTCCACCCCAATTCGCTGGCACCGGGGCCAGGAACCTCGGGCCCACAGGCACGGGAACCAGGACGCCAACCACAGCTTCTTCAGCTGGTTCTCAAACCATAGCCTCCCAGAGGCTGACAGGATTGCTGAG
Seq C2 exon
ATTATCAAGAATGACCTGTGGGTTAACCCTGTGCGTTACTACATGATGGGAGAAGGGGGCTACAGAACAAGCAGAAAGAAGCAAGAAAAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017783_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.394
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(19.8=100)
A:
PF0095613=NAP=FE(25.7=100)
C2:
PF0095613=NAP=PD(9.1=51.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGGATCTCAGACATATCTCCA
R:
CTTTCTTCTTTTTCTTGCTTCTTTCT
Band lengths:
210-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development