MmuEX6046533 @ mm10
Exon Skipping
Gene
ENSMUSG00000041096 | Tspyl2
Description
TSPY-like 2 [Source:MGI Symbol;Acc:MGI:106244]
Coordinates
chrX:152339633-152340380:-
Coord C1 exon
chrX:152340086-152340380
Coord A exon
chrX:152339862-152340007
Coord C2 exon
chrX:152339633-152339727
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTATCTCTTCCTCTTCTAGGCC
3' ss Score
12.6
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TTCCTCAACCACCCCAGAATTTCAATCTTGATCAACCAACGTGACAGAGACATTTTCCGCTACTTGACCAATCTTCAGGTCAGGCCAAAGAAGAAAGCCAAGGAATCTGGTCTTTGGAGGTGAGGGGGTGGGTGGGAAGGGCCCTGGGAGGGATAGATACCACTATTACCCCACCCTGAGCAGGTACAGGACCTCAGACATATCTCCATGGGCTACAAAATGAAGCTGTACTTCCAGACAAACCCATACTTTACAAACATGGTGATCGTCAAGGAGTTCCAGCGCAACCGCTCAG
Seq A exon
GCCGGTTGGTGTCTCATTCTACCCCAATACGTTGGCACCGGGGCCAGGAACCCCAGGCCTATAATCGCAGGAGCCATGACACCAGAGAAAGCTTCTTCAACTGGTTTTCCAATCACAGCCTCCCAGAAGCTGACAGAATTGCTGAG
Seq C2 exon
ATCATCAAGAACGACCTGTGGGTTAACCCAGTACGCTACTATATGAGACGAGGTGGCTACAGATCAAGCAGAAAGAAGCAACACGGAAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041096-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.245 C2=0.375
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(19.8=100)
A:
PF0095613=NAP=FE(25.7=100)
C2:
PF0095613=NAP=PD(9.1=53.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTCTTTGGAGGTGAGGG
R:
TCTGTAGCCACCTCGTCTCAT
Band lengths:
253-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types