RnoEX0101192 @ rn6
Exon Skipping
Gene
ENSRNOG00000006797 | Zfp280c
Description
zinc finger protein 280C [Source:RGD Symbol;Acc:1564669]
Coordinates
chrX:135372227-135373760:-
Coord C1 exon
chrX:135373698-135373760
Coord A exon
chrX:135373337-135373432
Coord C2 exon
chrX:135372227-135372345
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACACCTATAATTCCAGCAGTGG
3' ss Score
2.1
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTCTCACAATGACCACCCAAGTAAGCAGCTTTGTATTTTTAAGAAGCATTCACGAGCTCTCAG
Seq A exon
TGGGGAAAAGAAGCAGGAACATCCTGAGTTCAAGGTCCCACTGGGCTAATCGTGAGACCCTGTCTCAAAGCAAACAAAACACAAGTAAAACATCAG
Seq C2 exon
GGGCATCACTCTGGTGTGCCTTAAATGTGACTTCCTAGCCGATACTTCTGGCTTAGACCGTATGGCTAAACACTTAAATCAACGTAAAACTCATACTTGCCAAGTTGTAATAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006797-'24-24,'24-23,25-24
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.938 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000044435fB16900
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACAATGACCACCCAAGT
R:
ACTTGGCAAGTATGAGTTTTACGT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]