RnoEX0101193 @ rn6
Exon Skipping
Gene
ENSRNOG00000006797 | Zfp280c
Description
zinc finger protein 280C [Source:RGD Symbol;Acc:1564669]
Coordinates
chrX:135372047-135373760:-
Coord C1 exon
chrX:135373698-135373760
Coord A exon
chrX:135372227-135372345
Coord C2 exon
chrX:135372047-135372083
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTAGTCTTCTCTTTTCATAGGGG
3' ss Score
8.6
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CTCTCACAATGACCACCCAAGTAAGCAGCTTTGTATTTTTAAGAAGCATTCACGAGCTCTCAG
Seq A exon
GGGCATCACTCTGGTGTGCCTTAAATGTGACTTCCTAGCCGATACTTCTGGCTTAGACCGTATGGCTAAACACTTAAATCAACGTAAAACTCATACTTGCCAAGTTGTAATAGAGAATG
Seq C2 exon
TTACTGAAAGAACCGGAACTTCTGAATCCACTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006797-'24-25,'24-24,26-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000044435fB16900
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCACAATGACCACCCAAGT
R:
AGAAGTGGATTCAGAAGTTCCGG
Band lengths:
98-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]