RnoINT0167960 @ rn6
Intron Retention
Gene
ENSRNOG00000006797 | Zfp280c
Description
zinc finger protein 280C [Source:RGD Symbol;Acc:1564669]
Coordinates
chrX:135372227-135373760:-
Coord C1 exon
chrX:135373698-135373760
Coord A exon
chrX:135372346-135373697
Coord C2 exon
chrX:135372227-135372345
Length
1352 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTAGTCTTCTCTTTTCATAGGGG
3' ss Score
8.6
Exon sequences
Seq C1 exon
CTCTCACAATGACCACCCAAGTAAGCAGCTTTGTATTTTTAAGAAGCATTCACGAGCTCTCAG
Seq A exon
GTAATTAATTGATCTTTTCCTGTTCTTTCTCTTTAAAAGTTGTAATTACACTTTCTAACCAGGTGTTGGTATACCTAGTTTAAAACCTAAATGATTGTCACTCAACAATCATTATGTTTGTTAATATAAAACGAGATATTAAGACCAGAGCTGCAGATGAAAACAATCAGCATACGGTATACTACTAGCTTTTAGACTTAGAAAAATGTACGGTGTTTGATATGACGAAACTGGGTGTGGTGGCTCACACCTATAATTCCAGCAGTGGGGAAAAGAAGCAGGAACATCCTGAGTTCAAGGTCCCACTGGGCTAATCGTGAGACCCTGTCTCAAAGCAAACAAAACACAAGTAAAACATCAGGTATGTATCTGCTTTGTTAACAAACTAATAATTATATTAAATTACTAAATTTACAGTCTTCATATCTCCTCTAACTTTATTCTGACTTAAATGCACTAGATTATATGCTTCAACAACTGAACCTTTTTGTTTGCTGTTGTGTCCAAAGTACCTAGTAATTTGGTATACAGAGAATATCCTAGTGCTTATTAGCTTTAAAAAGAGATTTTGAAATCTTTTTCAGACCTCTATATTTCTTTTTTGTTGTTCTTGTTAGGCTTTTGTTCGTTTTTTAAAATATATTTATCTTATGTATACACTGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCTATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGGATTGAAAACTCAGGACCTCTGGAAGGGCAACCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCACAGTTCCAAATACTAAGCCAAGGCACGGAATCACCATGACTTATATGAGTTGTACAAGTTGCTAGTTGAGCCAAGACTATTTTGAGTCTCTGGATGTGAATATTTTAGCAACAAATTGAGAGTATATAATTTATTTTTTTTCTTCTTTTTTCTTTTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGTTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCGAGAGTATATAATTTAGAAAGCACTAAAAGATAGCATAATTTAGCAGGGGCTAGGCTATTTTCTTGAGCATCCTTTTTTTTCAGAGCCTAAACCTAGGGCCTTGCATATGCAAAGTAAATGCTTCCTACAACCCCTACCCTTTAAGAAACATAAAGATAGTTCATATTTGTAACAAATTGTGAAATGACAATGATGGCACATAAAATAAAAATCAGGAGTTATTACACAGAACAATTACTGAATTTATGCATGTATTTCCACATGTGATCCTCTGTCTTATTAGTCTTCTCTTTTCATAG
Seq C2 exon
GGGCATCACTCTGGTGTGCCTTAAATGTGACTTCCTAGCCGATACTTCTGGCTTAGACCGTATGGCTAAACACTTAAATCAACGTAAAACTCATACTTGCCAAGTTGTAATAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006797:ENSRNOT00000044435:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCACAATGACCACCCAAGT
R:
CATTCTCTATTACAACTTGGCAAGT
Band lengths:
182-1534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]