HsaINT0186720 @ hg19
Intron Retention
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129339271-129343689:-
Coord C1 exon
chrX:129343627-129343689
Coord A exon
chrX:129339390-129343626
Coord C2 exon
chrX:129339271-129339389
Length
4237 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TGTCTTCTTTTTTTTCATAGGGG
3' ss Score
10.46
Exon sequences
Seq C1 exon
CTCTCATAGCAACCATCCAGGTAAACGGTTTTGTATTTTCAAGAAGCATTCAGGAACTCTCAG
Seq A exon
GTAATCATTGATCTTTTTTTTTTCTTTCAATTGAAATATTGCAGTAACTTTTTAAAACTTGATGTTGGAGTGCCTGCTTTGGAAATGATAGAGTTCTGTTTATTATGTCCTTGGACCAAAGTTGGAGGGATAGCCTATCATCTCTGACTAAACTCTGTAGTGCCAAGCATTAAGATGAAACCTTCATGTATTTGCGTTTGTAAAATAACAAAAATAAGGTTCTCCAACCATATCTGAATAGAAGTAAGTTTATGAAAATACCATAATACTTGAAATCAATATATAGCCTTCATAATTGTTAATGTTTTTAGAATTAAAGTATATAAGTTGTTTACTGTACAGAAAAAAAATTGATGAATATTTCTAAAGGCATTGATAATTACCATTGGTTACACCACACACATTTAGCTCAGAATCAACTAAACATCTGTTTTTTTACATTATTTTGTTATCTTTTGACTCCATCTTCCTTTGTTAATTATTTTGCTCATGTTGACAGATGTTTGCCAGGCACATAGTACCTGGCACATAGTAGGCACTTGGTAAATATTTGTTGAATAAGTTAATGTATATGTTGAAAATGAATTATGTGGATAATGTTGGACCAACAGCTCATAGAGGAAATTTTTATTGTATTTTTAAAACATACTCATGTTAGGCCAAGTGCAGTGGTTCACACCTGTAATCCTAGCACTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGCGAAACCCTGTCTCTACTAAAAATACCAAAATTAGCCGGGCATGGTGGCAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGAGGGCAGAGGTTGCAGTGAGCCGAGATTGCACCACTTAACTCCAGCCTGTGCAAAAGAGCAAAACTCCATCTAAAAAAAAAAAAAAAAATTATGCTATTTTTAAAGCATTGAATTCGAGGAATTAGAAAAGAGTAAAATATATTAGGTGTTACCTTTACTGAAAAATGCTTATAAGAATGAAAAGAGATTTAATTCTAAAGATGAGACTTCGATTTGATTTTTACCACATTATGGTCAAGCTCAATTGTATGCTTGGTTTTTAAATTAACTGTATGATTTGAAAGATCTGAGGTGCTTTTTTTTCAACTTGAGTGGATCTCACATCTGAATAGAAAATTGATCAAATTCTGTGTATGGGTCGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGGATCACTTGAGGCCAGGAGTTCAGGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTCGCCGGGCGTGGTGGCGCATGCCTGTCATCCCAGCTACTCAGGAGGCTGAGGCACGAGAATTGCTTGAACCTGGAAGGCGGAGGTTGCAGTGAGCCAAGATTGCGCCACTATACCCCAGCATGGGCCACAGTGAGACTCGGTCTCAAAAAATTTTTTTAAAAAAATCTGTGTATGGACATAGCATTTTGTATTTCTATAAACAATTTTTTCATAATTACTATTTTGTTAAAATGAAATATTCTTTAGCTATTTATTGTGTACCTATCATGTATAATACAGCGTAGGAAGTCCTATACAGATGACCGTGATGAAGAAGGCTTGTACCAACCTTCAAGGAATGTACAATTTATTAAAGGGGTATGGATATAAGGTGTGAACATAAATAACTACAGTAATTCAAAGAGGTTTCTAGTAAGTGCAGTGAGAGATACAGATTTCAAAGGGGAGAAAGGTTTCTACTTACAAGAAGAGGCACAAGGGCATTCTAGTTGGAAGAAATAACATGAATAAAAGTTCAGAAAGGAAAATGCAGAAACTATACACATTCTCCGGAATGACAATGAATAACTAGGAGTAAAATTTGGATGAAGCACAAAGTTCATATAGCATAGTATTATATTAAGATCAAAGTTGGCCGGGCACGGTGACTCATGCCTGTAATCCCAGCACTTTGGGCAGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTTAAGACCAACCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATGCAAAAAAAATTAGCCGGGCATGGTGGTGTGCGCCTGTAATCGCAGCTACTCAGAGGCTGAGGCAAGAGAATCACTTGAACCCGGGAGGTGGAGGTTACAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGTGGGACTCCATTCCAAAAATAAAAAAAGATCAGTCTGGGGAGATAGTTTTGAACTTAGATGCAGATTGTTGAATCCTTGAAAACAAGGCTGGGGAGTTTGGGCTTAATTTTCATTTGGAAGACATTGGGGAAGCCATTGATGTTTTGAGTAGAATCAAGGGTGCTGAAGGAAGATCACTTTGGAGGAGTATACAGGATGAGTTGTAGCTGCATGAGACACATAGGCTGGTTAAGGCTATTGTAGTGGTTAAGACTTACTTAATAATGCCCTGGGCTGAGGTGGTGGGGTGGTATCACATCATATTTAAGAGCATGGGCTTCAGAATCAAAGGGCTCCATTTCCAACCTGATCCTGGCCTCAGTAGATTACTGAAACTAATTCTGTCCTCTGTAAAAAGGTAATAATTGTAGCACCTATCTCTTTGGGTTGCCATAAGATTTAGATCAGGCAATAATGTCTAAAACCCTCAGACTGGCATAGAGTAAGTACTCGATAAATCGTTAACATCATAAAACGTTTGAAATATTGAATGTTTTACGTAAGAAGAAAGTCAGAGATAACTACAAATTTGAGCCTCAGTATTAGGGAAATGGCATCATAAAAGAGACTTTCCCCCTAAATTTCATGGGGAAAGCACATGATTCCAGTTTTATGAAGATAATTTTTGATGTGCAGGAGTTCTGGCTAGGTGTAAATCCACAACAGGTTGTTAAAACTAGAGAAGTAGCCAGGCACGGTGGCTTACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACAGTGAAACCCTGTCTACTAAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGAAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGACAACAGAGCCAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAACTAAAGAAGTCAATCCAAGGTATGCACTGGTTTCCTATAGAGGTGAAATATTTAAGTTTAAAGTATCTGATGAACTTCAAAAGTATATGTATGCTTTGTTAATAAACTGATAATTACAGGATTTTAAAACCTTCACATTTCTTTTCTAATTTTATCCTCATTTGACTAAGATACTAGATTGCAGAATCCACACACTGTACCTTTTTTGTTTACTGTTATATCTACAATACCTAGTAGTACAGTGTGGGTGAAGAAGGTTGTCAGCAAATGAATATTTATATATTTCAGTGAATGAATATTATATCCTTGCTTTGTAAGTAATAACTTGCACACATTACTTAAGTTGTTAAGGGAGACTTGGCTTTGAGTCTCTTGATGCCTAGCTTTCAGCAACAAGTTGAGAGGTGACAATTTATAAAGCACTAAATGTTAGCGTAATTTGAATATGGCGATGCCATTTTCTTTTCCTTTTTTTTTTTTTTTTTTAACATAGTCTCGCAGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGTCTCAGCCTCCCAAGTAGCTGAGAGTAGCTGGGGCTACAGACTCACGCCATGATGCCTGACTAATTTTTGTATTTTTAGTAGAGACGAGGTTTCACCATATTGGTCAGGCTGGTCTCGAACTCCTGACCCCAGGTGATCCATCCACCTCTGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCCAGCGATGCCATTTTCTAGAGAACTATTTTAAATATATCAAGTTTATATAACAAAATTGGAAAATGACGGTTGTGGAGACTAAAATGCAAATCAAGTTAGTACATGGAAAAGTAATTATTGAGCTCATATGGATTTTCATAAATGATAAGAATATTTCTTACTGTCTTCTTTTTTTTCATAG
Seq C2 exon
GGGCATTACTCTAGTGTGCCTTAAATGTGATTTCCTAGCTGATTCTTCCGGCTTAGATCGTATGGCTAAACACTTAAGTCAACGTAAAACTCATACTTGCCAAGTTATAATAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-ZNF280C:NM_017666:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)