HsaEX6053324 @ hg19
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129339091-129343689:-
Coord C1 exon
chrX:129343627-129343689
Coord A exon
chrX:129339271-129339389
Coord C2 exon
chrX:129339091-129339127
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTTTTTTTTCATAGGGG
3' ss Score
10.46
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CTCTCATAGCAACCATCCAGGTAAACGGTTTTGTATTTTCAAGAAGCATTCAGGAACTCTCAG
Seq A exon
GGGCATTACTCTAGTGTGCCTTAAATGTGATTTCCTAGCTGATTCTTCCGGCTTAGATCGTATGGCTAAACACTTAAGTCAACGTAAAACTCATACTTGCCAAGTTATAATAGAGAATG
Seq C2 exon
TTTCCAAAAGTACCTCAACTTCTGAACCCACTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCATAGCAACCATCCAGG
R:
CCAGTAGTGGGTTCAGAAGTTGA
Band lengths:
100-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)