MmuEX0053161 @ mm9
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:45896582-45900504:-
Coord C1 exon
chrX:45900442-45900504
Coord A exon
chrX:45896762-45896880
Coord C2 exon
chrX:45896582-45896618
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTAGTCTTCTCTTTTCATAGGGG
3' ss Score
8.6
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
CTCTCACAATGACCACCCAAGTAAGCAGCTTTATATTTTTAAGAAGCAATCACGAGCTCGCAG
Seq A exon
GGGCATCACTCTAGTGTGCCTTAAATGTGACTTCCTAGCCGATACTTCTGGCTTAGACCGTATGGCTAAACACTTAAATCAACGTAAAACTCATACTTGCCAAGTTGTAATAGAGAATG
Seq C2 exon
TTACCGAAAGAGCCGTAACTTCTGAATCCGCTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.466 A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCACAATGACCACCCAAGT
R:
AGAAGCGGATTCAGAAGTTACGG
Band lengths:
98-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: