RnoEX0101773 @ rn6
Exon Skipping
Gene
ENSRNOG00000043223 | Zfp949
Description
zinc finger protein 949 [Source:RGD Symbol;Acc:2302581]
Coordinates
chr8:96356088-96361043:+
Coord C1 exon
chr8:96356088-96356574
Coord A exon
chr8:96360408-96360464
Coord C2 exon
chr8:96360995-96361043
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTTCTTTCTTCAGAGG
3' ss Score
10.58
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGAGGCTCACGGGTAATGTAGTCCCTAACGTACAAGGCCCTCCCACACAGGATCAGGTAACCGGCTCTGACAGTTGACTGGTAGGCACCTCTGTCCTGCACTCCCTTTGCAACTACCCCTTAGAAAGTCGCATCCTGGCTCTGTGCTGACACCTTAGCTCGGGCTGTGAGTTTGGTCCAGGTTTTCTGGAGGCGGGTGGGAAAAACAAAAAGAGGAGTGCGGTTTCGGAGTCCTCGGAAGCGGGACTCGTGCCCTCTAGCTCGGTTGAAGCAGAAACATAGGTGGGTCTTGGCGAAGGGACTGAGGTGCAGTTCCAGGGCGGACCGCAGCGGCTCTGGGGGAGGTGACTGTCAGAGCCATCATTCCCGGTCCGACGGTCGGCCTGGACAAGACTTTCATGGTTGCTGTATCCGAAGACTGAGCTAGGAGTGTCTGGATCTGTGGTTCCAACTGTCCAAAGGGCCATTACAGAAGCTCTGCCAAGGAG
Seq A exon
AGGCTTGAAGTTCTTACTGTACAGATCTTTCACTTGCTTGGTTAAAGTCACACCGAG
Seq C2 exon
GTCTCTGGGCTATCCGGCTTCTGGTTCCTGGCCCTCCAGGCAGCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043223-'1-1,'1-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGCCTGGACAAGACTTTC
R:
CCAGGAACCAGAAGCCGGATA
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]