RnoEX0101774 @ rn6
Exon Skipping
Gene
ENSRNOG00000043223 | Zfp949
Description
zinc finger protein 949 [Source:RGD Symbol;Acc:2302581]
Coordinates
chr8:96356088-96362946:+
Coord C1 exon
chr8:96356088-96356574
Coord A exon
chr8:96360995-96361043
Coord C2 exon
chr8:96362744-96362946
Length
49 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCCGTTCTATTCTAGGTC
3' ss Score
13.02
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGAGGCTCACGGGTAATGTAGTCCCTAACGTACAAGGCCCTCCCACACAGGATCAGGTAACCGGCTCTGACAGTTGACTGGTAGGCACCTCTGTCCTGCACTCCCTTTGCAACTACCCCTTAGAAAGTCGCATCCTGGCTCTGTGCTGACACCTTAGCTCGGGCTGTGAGTTTGGTCCAGGTTTTCTGGAGGCGGGTGGGAAAAACAAAAAGAGGAGTGCGGTTTCGGAGTCCTCGGAAGCGGGACTCGTGCCCTCTAGCTCGGTTGAAGCAGAAACATAGGTGGGTCTTGGCGAAGGGACTGAGGTGCAGTTCCAGGGCGGACCGCAGCGGCTCTGGGGGAGGTGACTGTCAGAGCCATCATTCCCGGTCCGACGGTCGGCCTGGACAAGACTTTCATGGTTGCTGTATCCGAAGACTGAGCTAGGAGTGTCTGGATCTGTGGTTCCAACTGTCCAAAGGGCCATTACAGAAGCTCTGCCAAGGAG
Seq A exon
GTCTCTGGGCTATCCGGCTTCTGGTTCCTGGCCCTCCAGGCAGCGTCAG
Seq C2 exon
GTCGGTTGGTATCTGGATTGGACTCAACTGGCAAATGACTGTCTTTTCCCACTTCAGTGACAGATGAAGCTGACGTCATCAGAGCTTCGAGGCTGATAAGTTCCAGGTGTCCAGTCCCACGGCCAGTGGTTCCTGTGGAGTCTTTTCAAGGTTCTGTGTTCATCAAGTTGGCACAAAGGTTCCTTACAACATATCTCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043223_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTGTCCAAAGGGCCATT
R:
TCAGCCTCGAAGCTCTGATGA
Band lengths:
137-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]