RnoINT0168756 @ rn6
Intron Retention
Gene
ENSRNOG00000043223 | Zfp949
Description
zinc finger protein 949 [Source:RGD Symbol;Acc:2302581]
Coordinates
chr8:96356088-96362946:+
Coord C1 exon
chr8:96356088-96356574
Coord A exon
chr8:96356575-96362743
Coord C2 exon
chr8:96362744-96362946
Length
6169 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GTTTTCCTACATCCCTGTAGGTC
3' ss Score
9.81
Exon sequences
Seq C1 exon
AGAGGCTCACGGGTAATGTAGTCCCTAACGTACAAGGCCCTCCCACACAGGATCAGGTAACCGGCTCTGACAGTTGACTGGTAGGCACCTCTGTCCTGCACTCCCTTTGCAACTACCCCTTAGAAAGTCGCATCCTGGCTCTGTGCTGACACCTTAGCTCGGGCTGTGAGTTTGGTCCAGGTTTTCTGGAGGCGGGTGGGAAAAACAAAAAGAGGAGTGCGGTTTCGGAGTCCTCGGAAGCGGGACTCGTGCCCTCTAGCTCGGTTGAAGCAGAAACATAGGTGGGTCTTGGCGAAGGGACTGAGGTGCAGTTCCAGGGCGGACCGCAGCGGCTCTGGGGGAGGTGACTGTCAGAGCCATCATTCCCGGTCCGACGGTCGGCCTGGACAAGACTTTCATGGTTGCTGTATCCGAAGACTGAGCTAGGAGTGTCTGGATCTGTGGTTCCAACTGTCCAAAGGGCCATTACAGAAGCTCTGCCAAGGAG
Seq A exon
GTGAGAGTCCAAGATGGCGACTTGGGGGTGAGGGCGGTTCGTGTCCGTGGATTGTCAGGGCCGGGAGGTCTCAGTGTGAGCCCACATTCCAGCTTTTTCTAGTGAATAATCTTGTTACCTGCTTGGCATCCGGTTTTGGGCGAGTTGGGGTGGAGAAAAACCATTAATTTGAGGCCTGGGAATTTTCACTAGCATGACCCAGAAATCCCAAACAGGGAGTCTGGGAAAATTGTAAGTTGATACCACAATGCTGGAGCCTGAAAGGGGGTGGAGTGGGGTAGGAGTCTGTGACCCACGCATCTGTAAGACAGAGGGTGTTAGCTATTCTAATGAATTGGCTTGAAATTCCTAGAGAAATTCTCACATAGTGACTGTACCCTTATGTATATTGGCAATTGTATTTGTCAGTTTTCCTGTCTCTTTATTAAGTGATGTTTTTGAGTCTCCTATGAACTATGTAGCCAGTTTGATAGTGACCAGCTTGGCACTTCAGGTTTGAGCTCTTAGAACAGCGGTTCTCGTCCTGTAGGTTCTCAACCTGAAAGGGCTGGGGTGGGTGGGTAGTGTCAAAAGATCCTTTCACAGGAATCGAATATCAGATATCTTGCATATCAGAAGTTTACATTAGGATTCCTAACATTAGCAAAATTAGTTATGAGACAGCAACGAAAATAATTTTATGGTTGGGGGTTACCACAGCACGAGGAACTGTATTAAAGGGTTGCAGCATTAGGAAGGTTGAGAACCACTGTCTTAGGTTTTGTTTAGTTTTTGAAAATATCTAGTTACCAGAGATAAGACGTTATCTCAGAAGATTCTAGTACTGAAAGATAAAAGTTTTAAAGTTGCCCCCCCTAGACATAAAGTTTAGAGCAGAAAAAGAAAACAGGTTAGGCCCCAGAATTGTATGTTCCAAGAAGCCTCTCCTAGGGCTATAGAATGGATAATTACATTGGCCAGCTCAACAGCTTTCTCCCAGAAACTAGCTGACCATAAATCTTAGAGAACAATCTTGAGAAGCAGGAAACAACTTCTCCTAGGAACTAGCGGACCATGAAGTTAAACAATCTGAGAAGTAAGAGACAGCTTCTCCTAGGAAACAATCTTGGGGGACAGAGAGTTCTTCCTTGTGATTTTTCACTGTTATTCTACACACTTTCCAATGACGCCACCCCTGCCCCCTCGAGTTGTGGTTTCTCCCTTTAAACACCTCTTCTCCCAGCCTCTCGGGGTCGAACTCCACTGCCCCTGCGTGGGATACGAGTCTCGACCCCAGTGCACTGGTTGCTATCGATAAACCTCATGCGATTACAACAAGGACGGTCTTGTGTGAGTTCTTGGGGGGTTGCGTCATCCCGAGACTTGAGTGAGGGTCTCCCCACTCCGGGGGTCTTTCAGTACTGATATAGGAACATTTTCTTGGGAACAAAGTAGGGAGGTTTCACGTACAGTAAGAATTCCATCCCACTTGTGTGGAGGAAGACCGTTAATAGGAAAGAGATCAGGAGGCACTGATTCCCGGTAGGGAGTTTACACCTGGTCTAAGCCTTAGATTGCTGCGCTGAACTCCACAGCACTGCAGAGCCTCGTTGACTGAAACTGTACTTTGATTAACCAGGTCTGCCTACGTTTTCATGGCACAGATTGCATCATCATATGCTAAGAACAGGACAGGGCTAATCTGGACTATCGGGTTCCTTTCCCATCACCTCGGTGCTCACCAGCACAGGGAAGGTCTACCGGGCTGTGAATGAATGCATTTGCCCTTTAGACCAGAATACTTTTACGGAGCATACTGCAATAGAGCAGCAAGCTGGGAAGCACTAGTGTACCACATGCATCATAGGCTAATGAGCCGTCGGTGAGGTCAGAGACAGAGGATATACTTGTTCAGTTAGAGGGAGTTTCTTTTTTTTCTCCATCTTTATTAAATTGGGTATTTCTTCTTTACATTTCAATTGTTACTACCTTTCCTGGTTTCCAGGCAAACATCCCTCTAACCCCTCCCTCTCCCCTTCTATATGGGTGTTCCCCTCCCCATCCTCCCCCTATTACTGCCCTCCCCCCAATAGTGGCTGTATATGTATGGGCTACATGTGGGGCAGGCTCTGAATGGGTGTTCCTTCTGCCTCTGTTCTAAACTTTGCCTCCCTATTCCCTCCAAGGGTATTGTTGTTCCCCTTTGAAAGAAGGAGTGAAGCCTTCGTATTTTGGTCATCCTTCTTGAGTTTCACGTGTTCTGTGCATCTAGGGTAATTCGAGCATTTGGGCTAATAGCCACTTATCAATGAGTGCATACCATGTGTGTTTTTCTGTGATTGGGTTACCTCACTCAGGATGATATTTTCCAGTTCCATCCATTGGCCTATGAATTTCATAAAGTCATTGTTTTTGATAGCTGAGTAGTATTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACACAGTGGAGTAAGTGTCTTTGTTATATGTTGGGGCATTTTTTGGATATATGTCCAAGAGAGGTATAGCTGGGTCCTCAGGTAGTGCAATGTGCAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAATGGTTGTACCAGTCTGCAATCCCACCAACAATGGCGGAGTATTCCTCTTTCTCCACATCCTCTCCAGCATCTGCTGTCGCTGGAGTTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGAGTTGTTTTTGATTTGCATTTCCCTTATGACTAAAGATGTTGAACATTTCTTTAGGTGCTTCTCAGCCATTTGGCATTCCTCAGCTGTGAATTCTTTGTTTAGCTCTGAACCCCATTTTTAAATAGGGTTATTTGTCTCCCTGCAGTCTAACTTCGTGAGTTCTTTGTATATTTTGAATATAAGCCCTCTATCAGTTGTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCGCTTTGTCCTAACAACAGAGTCCTTTGCCTTACAGAAGCTTTGCAGTTTTATGAGATCCCATTTGTCGATTCTTAGAGCATAAGCCATTGGTGTTTTGTTCAGGAAATTTTTTCCAGTGCCCATGTGTTTGAGATGCTTCCCCACTTTTTCTTCTATTAGTTTGAGTGTATCTGGTTTGATGTGGAGGTCCTTGATGATCCACTTGGACTTAAGCTTTGTGCAGGGTGAGAAGAATGGTTTGATCTGCATTCTTCTACATGCTGACCTCCAGTTGAACCAGCACCATTTGCTGAAAATGCTATCTTTTTTTCCATTGGATGGTTTTGGCTCCTTTGTCAAAAATCAAGTGCCCATAGGTGTGTGGGTTCATTTCTGTGTCTTCAATTCTATTCCACTGGTCTATCTGCCTGTCTCTGTACCAATACCATACAGTTTTTTTTTTTTTTTTTTTTTTTGAGCTGAGGACAGAACCCAAGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTACCATACAGTTTTTAATCACTATTGCTCTGTAATACTGCTTGAGTTCAGGGATAGTGATTCCCTCACAAGTCCCTTTATTGTTGAGGATAGTTTTAGCTATCCTGGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGTTCTAACTCTCTGAAGAATTGGATTGGAATTTTGATGGGGATTGCATTAAATCTGTAGATCGCTTTTGGTAAAATGGCCATTTTTACTATATCAATCCTGCCAATTCATGAGCATGGGAGATCTTTCCATCTTCTGAGGTCTTCTTTTTCTTTCTTCAGAGGCTTGAAGTTCTTACTGTACAGATCTTTCACTTGCTTGGTTAAAGTCACACCGAGGTAATTTATCTTTTTTTTCTTATGTTTTTTTATTTATTATATATTACATCCCAATGGTTGATTTCCCCCACCTCCTCTTCTTGCAATCCTACCCACCCTCTTTCATTCCTCCTTCATTTCCCTTCAGCGGAGGGCTGGCCTCCTAGAGATACCAAACATGGCGTATCAAGTTGCAACAAGACTAGGCACCTCTCATATTAAGGCTGCGTAAGGCAACCCAGTAAGAGGAGAAGGGTCCTCAAAGCAGGCAAGTGTCAGAGCCAGCCCCCATCCCCACTGTTAGGAGCCCCACAAGAAGAATCAAGCTACATAATCATAAAATAAATGCTGAGTGTCCTAGGTCAGACCCACACAGGCCCCGTGATTGTAGGATTAGTCTGTGAGTCTCTATGGGACTAGGTTAGTTGATTCTGTAGGTTTTCTTTTATTGTCCTTGACTGCTCTGGCTCCTACAATCCTTCCTCCCCATCTTCCACAGGATTCACTGAACTTCACCTAATGTTTGCAAGGTGTGTTCCGTTCTATTCTAGGTCTCTGGGCTATCCGGCTTCTGGTTCCTGGCCCTCCAGGCAGCGTCAGGTATGGGTTTAGGGGGAATTTCTTTGTGTATTTCTCTGACATGTAATACCTGCTGTGTGAGGATCAGTCCACATGAATAAGTGTGCAGCTTAGGGAGTTAAGCAAGGGCTAACTGAATGTAATTTCTAGCTGTGTAATGGCTAGGCAAGCAATCACAGTCCTGTGAAGGTGGACCTGGTCCACTGCAGACTAGATCTCTTATTAAATACCTTTCCTCCACAGTGAGTGCCTTTCAGCAGAGCAATTACTGATCCAATTGCTTAGAACAAAATTTGGGCAAAGCTACCACCTTCTCCAGAAGCTGTCAAGACATGGGTAATAGTTAGGGGCTCGATCTTTAGGAGCTTGTGGCTAACTCTCTTCTACCAGCTATGTTGAAAAAGATAGGCAAGGCCCTGGAAAATATTTATTGGATCTGGAAGTTGTGGTCTAGCTCACGCCATTGGGTCAGTGAATTTACTTTTCCCGTCTTCCCCCACTGTTTCCAGCATGTGAGTTCCTTTTAAAATTAATCAGTTGGTTAAAATTAACTAACTTTGTGTGTGGGCATATTGTCTGCATGTATGTCTCTTTACTATGTGCATGCCTGGTGCCTGAAGAGGTCAGATAGGGCGTAGGAACCCCTGGATCTGGAGCTATAGGCTGTTGTGAACAGCTATGTAGGTTCTGGCAATTGAACCTGGTCCTCTGGAAGAACAGCTGTTGATGTTGTCTGCTGAGTACATCGGTAGCCTCATATGAGCTTTTTTAGGACAGCATTATTAACAGAATTCTCACGTGGAAACAGATGACGATGGTTCCTCTGTCTTGGCAGTGGCTTTGGGTCATTCACACATATACCTTACCTTCATTTGAAAGACGACAAAATTGCTTCCAAGGAACTAAGAGACTTGTCAAGGGTAACATGATATGTAGGTGCCAGGGATGTACTGATGCTTTGACTATTATTTACTTTGTACAGTTAAGAAAAATCAATGTTTGTGTATTTTCTAATATTGACTTCTAGTTACCATGTAATATCTTCAGATTTGTGTGGTTTTATGTTTTGTGTTGAAACCTAGCATCTGAGTGTGATCTGCAAATGGTTTCCTACAGAGTAAAACACCTTGTCCTGGGCATCCTACGCTTGCCATCAATACATTCTGTACACTGTGTAACCTTAAAGGTATAAAACGAAAGTGTCTTGCTTAATGCTAGCATTCTGTTAACCAAAATTCATAAGGTAGAGATGAAAACAGTAGGAGTCTATCTCTGTTGTAAAATGAAGAAATAGATTGCACAAACTTGTGCTGTAAACCTGTATGTGCAAACCATTATGACTTTAGCTATTCTTCCTGTGGCTTTCAAGCTGTGGGCATCTAGTTGCAGAGTTCTTGTTATAGTTGTCATGCTTGGGTACCATTTCCCGTTCCCCAGTATGTGAAAGAAATACAATCACTAAATGTATCAGCCTTGCCAGGCAGTGGTGGGCCACATTTTTTAATCCCAGGACTTGGGGCGGGCAGAACTCTGAGTTCCAGGATAGCATGGTCTACAGAGTGAGTTCCAGGATAGTCAGGTCTATATAGAGAAACCTTGTCTCAAAACACAAAACCAAAACCAAACCAAACCAAAACCAAAGGCATCAGCCTTTCTTGTACAACAAGTCAACAAAAAATGGTGCTTTAAAGTAAAATTTTTGTTTTCCTACATCCCTGTAG
Seq C2 exon
GTCGGTTGGTATCTGGATTGGACTCAACTGGCAAATGACTGTCTTTTCCCACTTCAGTGACAGATGAAGCTGACGTCATCAGAGCTTCGAGGCTGATAAGTTCCAGGTGTCCAGTCCCACGGCCAGTGGTTCCTGTGGAGTCTTTTCAAGGTTCTGTGTTCATCAAGTTGGCACAAAGGTTCCTTACAACATATCTCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043223:ENSRNOT00000032976:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]