RnoEX0102162 @ rn6
Exon Skipping
Gene
ENSRNOG00000012192 | Znf740
Description
zinc finger protein 740 [Source:RGD Symbol;Acc:1589052]
Coordinates
chr7:143814343-143815388:+
Coord C1 exon
chr7:143814343-143814468
Coord A exon
chr7:143814867-143814990
Coord C2 exon
chr7:143815270-143815388
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGCCTGATTGTTGCCCCCAGGTG
3' ss Score
10.56
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATGGACTGTAAGCCTAGATTTGATTTGTCTTCAAAGGGCCACCGAAAAGACAGTGATAAATCCCGCAACCGCAAAGATGATGACACCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
Seq A exon
GTGGTGGTAGTGGAACAAAATGGCTCTTTTCAAGTAAAGATCCCCAAAAATTTTATTTGTGAACACTGCTTTGGAGCCTTTCGGAGCAGTTATCACCTCAAGAGGCACGTCCTTATCCACACGG
Seq C2 exon
GTGAGAAACCGTTTGAGTGTGACGTATGTGATATGCGTTTCATCCAGAAGTACCATCTTGAACGCCACAAGCGGGTACACAGTGGCGAAAAGCCTTACCAGTGTGAACGATGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012192_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PU(38.5=23.8)
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTGTAAGCCTAGATTTGAT
R:
TGATGACATCGTTCACACTGGT
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]