GgaEX0018105 @ galGal3
Exon Skipping
Gene
ENSGALG00000012049 | ZNF148
Description
NA
Coordinates
chr7:29639793-29643821:-
Coord C1 exon
chr7:29643696-29643821
Coord A exon
chr7:29640544-29640667
Coord C2 exon
chr7:29639793-29639876
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTACTCTTTTTAAAATAGATC
3' ss Score
7.82
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATCAGTGTAAAGCAAGAAATTACCTTTACTGATGCATCTGAACAACAGAAACGAGACAAAAAACAAATACGAGAGCCAGTAGATTTGCAGAAAAAGAAGAAAAGAAAACAGCGTTCACCAGCAAAA
Seq A exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTCTGAAAACCCACAAATCTCATGTTTGTGAGCATTGCAATGCTGCCTTTAGAACCAACTACCATTTACAGAGACATGTCTTCATTCATACAG
Seq C2 exon
GTGAAAAACCATTTCAGTGCAGTCAGTGCGACATGCGTTTCATACAGAAGTACCTGCTACAGAGGCATGAGAAGATTCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049-'2-3,'2-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127602=Zn_Tnp_IS1595=PU(69.8=71.4),PF134651=zf-H2C2_2=PU(38.5=23.8)
C2:
PF127602=Zn_Tnp_IS1595=PD(27.9=41.4),PF134651=zf-H2C2_2=PD(57.7=51.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTGTAAAGCAAGAAATTACCTT
R:
CAGTATGAATCTTCTCATGCCTCTGT
Band lengths:
210-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]